Name: Desulfotalea psychrophila LSv54
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4030

Type strain:

Species: Desulfotalea psychrophila

Strain Designation: LSv54

Culture col. no.: DSM 12343

Strain history: <- C. Knoblauch, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; LSv54 <- C. Knoblauch {1997}

NCBI tax ID(s): 84980 (species)

SI-ID 49273

DSM 12343

Section

Desulfotalea psychrophila LSv54 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from marine mud.

Gram-negative
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfotalea*
	Species	**Desulfotalea psychrophila**
	Full Scientific Name (LPSN)	Desulfotalea psychrophila Knoblauch et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #23372]	Gram stain	negative

[Ref.: #23372]	Cell length	4.5-7.4 µm

[Ref.: #23372]	Cell width	0.6 µm

[Ref.: #4704]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4704]

Culture medium

DESULFOTALEA PSYCHROPHILA MEDIUM (DSMZ Medium 861a)

[Ref.: #4704]

Culture medium growth

[Ref.: #4704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4704]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4704]	growth	8 °C
[Ref.: #23372]	growth	-1.8-19 °C
[Ref.: #23372]	optimum	10 °C

[Ref.: #4704]	Temperature range	psychrophilic
[Ref.: #23372]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #23372]			optimum	7.3-7.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4704]	Oxygen tolerance	anaerobe
[Ref.: #23372]	Oxygen tolerance	obligate anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23372]		NaCl		optimum	1.0	%
[Ref.: #23372]		MgCl2		growth	0.03-0.7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23372]	acetate ChEBI	-	electron donor
[Ref.: #23372]	alanine ChEBI	+	carbon source
[Ref.: #23372]	alanine ChEBI	+	electron donor
[Ref.: #23372]	butanol ChEBI	+	carbon source
[Ref.: #23372]	butanol ChEBI	+	electron donor
[Ref.: #23372]	butyrate ChEBI	-	electron donor
[Ref.: #23372]	decanoate ChEBI	-	electron donor
[Ref.: #23372]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #23372]	elemental sulfur ChEBI	-	reduction
[Ref.: #23372]	ethanol ChEBI	+	carbon source
[Ref.: #23372]	ethanol ChEBI	+	electron donor
[Ref.: #23372]	formate ChEBI	+	carbon source
[Ref.: #23372]	formate ChEBI	+	electron donor
[Ref.: #23372]	fumarate ChEBI	+	carbon source
[Ref.: #23372]	fumarate ChEBI	+	electron donor
[Ref.: #23372]	fumarate ChEBI	+	fermentation
[Ref.: #23372]	glycerol ChEBI	-	electron donor
[Ref.: #23372]	glycine ChEBI	+	carbon source
[Ref.: #23372]	glycine ChEBI	+	electron donor
[Ref.: #23372]	hexadecanoate ChEBI	-	electron donor
[Ref.: #23372]	lactate ChEBI	-	fermentation
[Ref.: #23372]	lactate ChEBI	+	carbon source
[Ref.: #23372]	lactate ChEBI	+	electron donor
[Ref.: #23372]	malate ChEBI	-	fermentation
[Ref.: #23372]	malate ChEBI	+	carbon source
[Ref.: #23372]	malate ChEBI	+/-	electron donor
[Ref.: #23372]	nitrate ChEBI	-	reduction
[Ref.: #23372]	nitrite ChEBI	-	reduction
[Ref.: #23372]	propanol ChEBI	+	carbon source
[Ref.: #23372]	propanol ChEBI	+	electron donor
[Ref.: #23372]	propionate ChEBI	-	electron donor
[Ref.: #23372]	pyruvate ChEBI	+	carbon source
[Ref.: #23372]	pyruvate ChEBI	+	electron donor
[Ref.: #23372]	pyruvate ChEBI	+	fermentation
[Ref.: #23372]	serine ChEBI	+	carbon source
[Ref.: #23372]	serine ChEBI	+	electron donor
[Ref.: #23372]	succinate ChEBI	-	electron donor
[Ref.: #23372]	sulfate ChEBI	+	electron acceptor
[Ref.: #23372]	sulfite ChEBI	+	electron acceptor
[Ref.: #23372]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #23372]	valerate ChEBI	-	electron donor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4704]	Sample type/isolated from	marine mud
[Ref.: #4704]	Geographic location (country and/or sea, region)	Spitsbergen, Storfjorden
[Ref.: #4704]	Country	Norway
[Ref.: #4704]	Country ISO 3 Code	NOR
[Ref.: #4704]	Continent	Europe

[Ref.: #23372]	Sample type/isolated from	permanently cold marine sediments
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF099062 (>99% sequence identity) for Desulfotalea psychrophila subclade from Microbeatlas

Aquatic Samples	543
Soil Samples	50
Animal Samples	12
Plant Samples	9
Total Samples	614

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4704]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4704]	Desulfotalea psychrophila strain LSv54 16S ribosomal RNA gene, partial sequence	AF099062	1492	ENA	177439 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfotalea psychrophila LSv54	GCA_000025945	complete	GenBank	177439 tax ID	*
[Ref.: #66792]	Desulfotalea psychrophila LSv54	177439.6	complete	PATRIC	177439 tax ID	*
[Ref.: #66792]	Desulfotalea psychrophila LSv54	637000094	complete	JGI IMG/M	177439 tax ID	*

[Ref.: #4704]

GC-content

46.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfotalea psychrophila LSv54 LSv54 NCBI: GCA_000025945.1
[Ref.: #69480]	motile	yes	82.329	no
[Ref.: #69480]	flagellated	no	58.216	no
[Ref.: #69480]	gram-positive	no	98.53	no
[Ref.: #69480]	anaerobic	yes	98.374	yes
[Ref.: #69480]	aerobic	no	97.656	no
[Ref.: #69480]	halophile	no	85.644	yes
[Ref.: #69480]	spore-forming	no	92.199	no
[Ref.: #69480]	glucose-util	no	60.438	no
[Ref.: #69480]	thermophile	no	98.331	yes
[Ref.: #69480]	glucose-ferment	no	83.362	no

Availability in culture collections External links

[Ref.: #4704]

Culture collection no.

DSM 12343

[Ref.: #73535]

SI-ID 49273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of a novel bacterial arginine kinase from Desulfotalea psychrophila.	Andrews LD, Graham J, Snider MJ, Fraga D	Comp Biochem Physiol B Biochem Mol Biol	10.1016/j.cbpb.2008.03.017	2008	*
Metabolism	Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp. strain Ac10, as the host.	Miyake R, Kawamoto J, Wei YL, Kitagawa M, Kato I, Kurihara T, Esaki N	Appl Environ Microbiol	10.1128/AEM.00824-07	2007	*
Genetics	The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.	Rabus R, Ruepp A, Frickey T, Rattei T, Fartmann B, Stark M, Bauer M, Zibat A, Lombardot T, Becker I, Amann J, Gellner K, Teeling H, Leuschner WD, Glockner FO, Lupas AN, Amann R, Klenk HP	Environ Microbiol	10.1111/j.1462-2920.2004.00665.x	2004	*
Phylogeny	Psychrophilic sulfate-reducing bacteria isolated from permanently cold arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica sp. nov.	Knoblauch C, Sahm K, Jorgensen BB	Int J Syst Bacteriol	10.1099/00207713-49-4-1631	1999	*

References

#4704

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12343

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23372

Christian Knoblauch, Kerstin Sahm, Bo B. Jorgensen: Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica sp. nov.. IJSEM 49: 1631 - 1643 1999 ( DOI 10.1099/00207713-49-4-1631 , PubMed 10555345 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73535

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49273.1 )

* These data were automatically processed and therefore are not curated

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Desulfotalea psychrophila LSv54 LSv54

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