Name: Haloarcula vallismortis DSM 3756
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5903

Type strain:

Species: Haloarcula vallismortis

Culture col. no.: DSM 3756, ATCC 29715, CCM 3404, NCMB 2082, JCM 8877, BCRC AR10046, CGMCC 1.6288, IAM 13180, IFO 14741, NBRC 14741, NCIMB 2082, VKM B-1791

Strain history: ATCC 29715 <-- C. Gonzalez J.F.54.

NCBI tax ID(s): 662477 (strain), 28442 (species)

SI-ID 39674

ATCC 29715, IFO 14741, JCM 8877, DSM 3756, CCM 3404, NCMB 2082, IAM 13180, NCIMB 2082, VKM B-1791, VKM B-1398, NBRC 14741, BCRC 14343, CCRC 14343, IAM 13170, CGMCC 1.2048

Section

Haloarcula vallismortis DSM 3756 is a mesophilic, Gram-negative archaeon of the family Haloarculaceae.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloarcula*
	Species	**Haloarcula vallismortis**
	Full Scientific Name (LPSN)	Haloarcula vallismortis (González et al. 1979) Torreblanca et al. 1986

Synonym

Halobacterium vallismortis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1342]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #1342]

Culture medium growth

[Ref.: #1342]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1342]

Culture medium composition

expand / minimize

[Ref.: #1342]

Culture medium

HALOBACTERIUM MEDIUM (DSMZ Medium 97)

[Ref.: #1342]

Culture medium growth

[Ref.: #1342]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1342]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1342]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #1342]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.913

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt pools of the Death Valley
[Ref.: #67770]	Geographic location (country and/or sea, region)	CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #1342]	Geographic location (country and/or sea, region)	Death Valley
[Ref.: #1342]	Country	USA
[Ref.: #1342]	Country ISO 3 Code	USA
[Ref.: #1342]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1342]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloarcula vallismortis 16S rRNA	U17593	1471	ENA	28442 tax ID
[Ref.: #20218]	Haloarcula vallismortis strain CGMCC1.2048 16S ribosomal RNA (rrnA) gene, complete sequence	EF645687	1472	ENA	28442 tax ID	*
[Ref.: #20218]	Haloarcula vallismortis strain CGMCC1.2048 16S ribosomal RNA (rrnB) gene, complete sequence	EF645688	1472	ENA	28442 tax ID	*
[Ref.: #20218]	Haloarcula vallismortis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8877	AB355982	1472	ENA	662477 tax ID	*
[Ref.: #20218]	Haloarcula vallismortis gene for 16S rRNA, complete sequence, strain: JCM 8877	AB663358	1472	ENA	662477 tax ID	*
[Ref.: #20218]	Haloarcula vallismortis DNA for 16S rRNA	D50851	1467	ENA	28442 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloarcula vallismortis ATCC 29715	GCA_000337775	contig	GenBank	662477 tax ID
[Ref.: #67770]	Haloarcula vallismortis DSM 3756	GCA_900106715	scaffold	GenBank	28442 tax ID
[Ref.: #66792]	Haloarcula vallismortis DSM 3756	2693429892	draft	JGI IMG/M	28442 tax ID	*
[Ref.: #66792]	Haloarcula vallismortis strain DSM 3756	28442.11	wgs	PATRIC	28442 tax ID	*
[Ref.: #66792]	Haloarcula vallismortis ATCC 29715	662477.6	wgs	PATRIC	662477 tax ID	*

[Ref.: #67770]	GC-content	61 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	64.7 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloarcula vallismortis DSM 3756 NCBI: GCA_900106715.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloarcula vallismortis ATCC 29715 PATRIC: 662477.6
[Ref.: #69480]	gram-positive	no	97.536	no
[Ref.: #69480]	anaerobic	no	96.312	no
[Ref.: #69480]	halophile	yes	90.879	no
[Ref.: #69480]	spore-forming	no	95.364	no
[Ref.: #69480]	glucose-util	yes	91.097	no
[Ref.: #69480]	flagellated	no	94.73	no
[Ref.: #69480]	thermophile	no	83.879	yes
[Ref.: #69480]	motile	no	80.035	no
[Ref.: #69480]	aerobic	yes	85.118	no
[Ref.: #69480]	glucose-ferment	no	84.616	no

Availability in culture collections External links

[Ref.: #1342]

Culture collection no.

DSM 3756, ATCC 29715, CCM 3404, NCMB 2082, JCM 8877, BCRC AR10046, CGMCC 1.6288, IAM 13180, IFO 14741, NBRC 14741, NCIMB 2082, VKM B-1791

[Ref.: #75383]

SI-ID 39674

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The taxonomic status of "Halobacterium marismortui" from the Dead Sea: a comparison with Halobacterium vallismortis.	Oren A, Lau PP, Fox GE	Syst Appl Microbiol	10.1016/S0723-2020(88)80009-2	1988	*

References

#1342

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3756

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75383

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39674.1 )

* These data were automatically processed and therefore are not curated

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Haloarcula vallismortis DSM 3756

Haloarcula vallismortis ATCC 29715

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