Name: Xanthomonas theicola DSM 18797
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17611

Type strain:

Species: Xanthomonas theicola

Culture col. no.: DSM 18797, CFBP 4691, ICMP 6774, LMG 8684

Strain history: <- CFBP <- ICMP <- K. Uehara

NCBI tax ID(s): 56464 (species)

SI-ID 265428

LMG 8684, ICMP 6774, ATCC 700184, DSM 18797, CFBP 4691

Section

Xanthomonas theicola DSM 18797 is a mesophilic, motile plant pathogen that was isolated from Camiella sinensis.

motile
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas theicola**
	Full Scientific Name (LPSN)	Xanthomonas theicola Vauterin et al. 1995

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %91.274

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7703]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #7703]

Culture medium growth

[Ref.: #7703]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7703]

Culture medium composition

expand / minimize

[Ref.: #7703]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #7703]

Culture medium growth

[Ref.: #7703]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7703]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7703]			growth	30 °C

[Ref.: #7703]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7703]	Sample type/isolated from	Camiella sinensis
[Ref.: #7703]	Host species	Camellia sinensis
[Ref.: #7703]	Geographic location (country and/or sea, region)	Chinan-cho
[Ref.: #7703]	Country	Japan
[Ref.: #7703]	Country ISO 3 Code	JPN
[Ref.: #7703]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Shrub (Scrub)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7703]	Pathogenicity (plant)	yes
[Ref.: #7703]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7703]	X.theicola 16S rRNA gene	Y10763	1502	ENA	56464 tax ID
[Ref.: #20218]	Xanthomonas theicola gene for 16S rRNA, partial sequence, strain: LMG 8684	AB558557	1421	ENA	56464 tax ID	*
[Ref.: #20218]	Xanthomonas theicola strain LMG8684 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF209763	541	ENA	56464 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas theicola CFBP 4691	GCA_014236795	complete	GenBank	56464 tax ID	*
[Ref.: #66792]	Xanthomonas theicola CFBP 4691	GCA_002940605	contig	GenBank	56464 tax ID	*
[Ref.: #66792]	Xanthomonas theicola strain CFBP 4691	56464.5	complete	PATRIC	56464 tax ID	*
[Ref.: #66792]	Xanthomonas theicola strain CFBP 4691	56464.3	wgs	PATRIC	56464 tax ID	*
[Ref.: #66792]	Xanthomonas theicola CFBP 4691	2878098136	draft	JGI IMG/M	56464 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xanthomonas theicola CFBP 4691 NCBI: GCA_014236795.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas theicola CFBP 4691 NCBI: GCA_014236795.1
[Ref.: #69480]	flagellated	no	84.414	no
[Ref.: #69480]	gram-positive	no	97.843	no
[Ref.: #69480]	anaerobic	no	98.954	no
[Ref.: #69480]	aerobic	yes	94.403	no
[Ref.: #69480]	halophile	no	95.311	no
[Ref.: #69480]	spore-forming	no	95.451	no
[Ref.: #69480]	glucose-util	yes	95.248	no
[Ref.: #69480]	thermophile	no	98.572	yes
[Ref.: #69480]	glucose-ferment	no	89.602	no
[Ref.: #69480]	motile	yes	81.406	no

Availability in culture collections External links

[Ref.: #7703]

Culture collection no.

DSM 18797, CFBP 4691, ICMP 6774, LMG 8684

[Ref.: #86604]

SI-ID 265428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	The Complete Genome Sequence of Xanthomonas theicola, the Causal Agent of Canker on Tea Plants, Reveals Novel Secretion Systems in Clade-1 Xanthomonads.	Koebnik R, Burokiene D, Bragard C, Chang C, Saux MF, Kolliker R, Lang JM, Leach JE, Luna EK, Portier P, Sagia A, Ziegle J, Cohen SP, Jacobs JM	Phytopathology	10.1094/PHYTO-07-20-0273-SC	2021	*

References

#7703

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18797

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86604

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265428.1 )

* These data were automatically processed and therefore are not curated

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Xanthomonas theicola CFBP 4691

Xanthomonas theicola CFBP 4691

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