Name: Henriciella aquimarina P38
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133491

Type strain:

Species: Henriciella aquimarina

Strain Designation: P38

Culture col. no.: CCTCC AB 208227, LMG 24711, MCCC 1A01086

NCBI tax ID(s): 545261 (species)

SI-ID 358672

LMG 24711

Section

Henriciella aquimarina P38 is a Gram-negative, rod-shaped bacterium that was isolated from hydrocarbon-degrading consortium .

Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Henriciella*
	Species	**Henriciella aquimarina**
	Full Scientific Name (LPSN)	Henriciella aquimarina Lee et al. 2011

Synonym

Maribaculum marinum

Information on morphological and physiological properties Morphology

[Ref.: #29185]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29185]	Cell length	1.3 µm

[Ref.: #29185]	Cell width	0.85 µm

[Ref.: #29185]	Cell shape	rod-shaped

[Ref.: #29185]	Motility	no

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29185]			growth	10-42 °C
[Ref.: #29185]			optimum	25-37 °C

[Ref.: #29185]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29185]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29185]		NaCl		growth	02-12	%
[Ref.: #29185]		NaCl		optimum	03-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29185]	acetate ChEBI	+	carbon source
[Ref.: #29185]	alanine ChEBI	+	carbon source
[Ref.: #29185]	aspartate ChEBI	+	carbon source
[Ref.: #29185]	cellobiose ChEBI	+	carbon source
[Ref.: #29185]	citrate ChEBI	+	carbon source
[Ref.: #29185]	dextrin ChEBI	+	carbon source
[Ref.: #29185]	galacturonate ChEBI	+	carbon source
[Ref.: #29185]	glutamate ChEBI	+	carbon source
[Ref.: #29185]	L-arabitol ChEBI	+	carbon source
[Ref.: #29185]	maltose ChEBI	+	carbon source
[Ref.: #29185]	ornithine ChEBI	+	carbon source
[Ref.: #29185]	phenylethylamine ChEBI	+	carbon source
[Ref.: #29185]	serine ChEBI	+	carbon source
[Ref.: #29185]	succinate ChEBI	+	carbon source
[Ref.: #29185]	threonine ChEBI	+	carbon source
[Ref.: #29185]	tween 40 ChEBI	+	carbon source
[Ref.: #29185]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29185]	acid phosphatase	+	3.1.3.2
[Ref.: #29185]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29185]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29185]	Sample type/isolated from	hydrocarbon-degrading consortium (seawater sample)
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU819081 (>99% sequence identity) for Henriciella aquimarina from Microbeatlas

Aquatic Samples	835
Soil Samples	14
Animal Samples	4
Plant Samples	1
Total Samples	854

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29185]	Maribaculum marinum strain P38 16S ribosomal RNA gene, partial sequence	EU819081	1415	GenBank	545261 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Henriciella aquimarina LMG 24711	GCA_002088975	contig	GenBank	545261 tax ID	*
[Ref.: #66792]	Henriciella aquimarina strain LMG 24711	545261.3	wgs	PATRIC	545261 tax ID	*
[Ref.: #66792]	Henriciella aquimarina LMG 24711	2832863383	draft	JGI IMG/M	545261 tax ID	*

[Ref.: #29185]

GC-content

61 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Henriciella aquimarina strain LMG 24711 PATRIC: 545261.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Henriciella aquimarina strain LMG 24711 PATRIC: 545261.3
[Ref.: #69480]	gram-positive	no	98.541	no
[Ref.: #69480]	anaerobic	no	98.431	no
[Ref.: #69480]	halophile	no	70.015	no
[Ref.: #69480]	spore-forming	no	96.69	no
[Ref.: #69480]	glucose-util	yes	79.076	no
[Ref.: #69480]	thermophile	no	98.41	yes
[Ref.: #69480]	aerobic	yes	90.303	no
[Ref.: #69480]	motile	yes	80.773	yes
[Ref.: #69480]	flagellated	no	86.134	yes
[Ref.: #69480]	glucose-ferment	no	94.033	no

Availability in culture collections External links

[Ref.: #29185]

Culture collection no.

CCTCC AB 208227, LMG 24711, MCCC 1A01086

[Ref.: #91466]

SI-ID 358672

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Henriciella litoralis sp. nov., isolated from a tidal flat, transfer of Maribaculum marinum Lai et al. 2009 to the genus Henriciella as Henriciella aquimarina nom. nov. and emended description of the genus Henriciella.	Lee SH, Shim JK, Kim JM, Choi HK, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.020396-0	2010	*
Phylogeny	Maribaculum marinum gen. nov., sp. nov., isolated from deep seawater.	Lai Q, Yuan J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.008177-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29185

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25609 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91466

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358672.1 )

#25609

IJSEM 3083 2009 ( DOI 10.1099/ijs.0.008177-0 , PubMed 19643895 )

* These data were automatically processed and therefore are not curated

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Henriciella aquimarina strain LMG 24711

Henriciella aquimarina strain LMG 24711

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