Name: Alistipes putredinis Carlier 10203
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14029

Type strain:

Species: Alistipes putredinis

Strain Designation: Carlier 10203, strain 1 Ando, 10203, 1 And

Culture col. no.: DSM 17216, CCUG 45780, CIP 104286, ATCC 29800, VPI 3293, JCM 16772

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10203 <- ATCC <- E.P. Cato: strain VPI 3293 <- S. Suzuki: strain 1 And

NCBI tax ID(s): 445970 (strain), 28117 (species)

SI-ID 92936

ATCC 29800, CIP 104286, CCUG 45780, DSM 17216, JCM 16772

Section

Alistipes putredinis Carlier 10203 is an anaerobe, mesophilic human pathogen that was isolated from Human, feces.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes putredinis**
	Full Scientific Name (LPSN)	Alistipes putredinis (Weinberg et al. 1937) Rautio et al. 2003

	Synonym	"Bacillus* putredinis"*
	Synonym	Bacteroides putredinis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.892

[Ref.: #69480]	Motility	no Confidence in %90.351

[Ref.: #6820]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6820]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #6820]

Culture medium growth

[Ref.: #6820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6820]

Culture medium composition

expand / minimize

[Ref.: #35647]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #35647]

Culture medium growth

[Ref.: #35647]

Culture medium composition

expand / minimize

[Ref.: #6820]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6820]

Culture medium growth

[Ref.: #6820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6820]

Culture medium composition

expand / minimize

[Ref.: #122073]

Culture medium

CIP Medium 20

[Ref.: #122073]

Culture medium growth

[Ref.: #122073]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6820]	growth	37 °C
[Ref.: #35647]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #6820]	Temperature range	mesophilic
[Ref.: #35647]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6820]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.648

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6820]	13372	-	-	-	-	-	+/-	-	-	-	-	-	-	+	-	-	+	+	-	+/-	+	+/-	-	-	+/-	+	+/-	-	+	-
[Ref.: #6820]	13190	-	-	-	-	-	+/-	-	-	-	-	-	-	+	-	-	+	+	-	+/-	+	+/-	-	-	+/-	+	-	-	+	-
[Ref.: #6820]	12249	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6820]	Sample type/isolated from	Human, feces

[Ref.: #67770]	Sample type/isolated from	Human specimens

[Ref.: #122073]	Sample type/isolated from	Human, Feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB554232 (>99% sequence identity) for Alistipes from Microbeatlas

Aquatic Samples	12321
Soil Samples	2823
Animal Samples	235653
Plant Samples	821
Total Samples	251618

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6820]	Pathogenicity (human)	yes
[Ref.: #6820]	Pathogenicity (animal)	yes
[Ref.: #6820]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122073]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes putredinis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16772	AB554232	1488	ENA	28117 tax ID
[Ref.: #6820]	Bacteroides putredinis ATCC 29800 16S ribosomal RNA gene, complete sequence	L16497	1468	ENA	28117 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes putredinis DSM 17216	GCA_000154465	scaffold	GenBank	445970 tax ID
[Ref.: #66792]	Alistipes putredinis DSM 17216	445970.5	wgs	PATRIC	445970 tax ID	*
[Ref.: #66792]	Alistipes putredinis DSM 17216	641736205	draft	JGI IMG/M	445970 tax ID	*

[Ref.: #6820]	GC-content	55 mol%
[Ref.: #6820]	GC-content	53.3 mol%	sequence analysis
[Ref.: #67770]	GC-content	55 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	53.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alistipes putredinis DSM 17216 DSM 17216 NCBI: GCA_000154465.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes putredinis DSM 17216 PATRIC: 445970.5
[Ref.: #69480]	gram-positive	no	98.514	no
[Ref.: #69480]	anaerobic	yes	97.925	no
[Ref.: #69480]	halophile	no	87.949	no
[Ref.: #69480]	spore-forming	no	97.271	no
[Ref.: #69480]	glucose-util	yes	74.173	no
[Ref.: #69480]	aerobic	no	96.194	yes
[Ref.: #69480]	flagellated	no	98.036	no
[Ref.: #69480]	thermophile	no	98.325	yes
[Ref.: #69480]	motile	no	93.145	no
[Ref.: #69480]	glucose-ferment	no	62.44	no

Availability in culture collections External links

[Ref.: #6820]

Culture collection no.

DSM 17216, CCUG 45780, CIP 104286, ATCC 29800, VPI 3293, JCM 16772

[Ref.: #83196]

SI-ID 92936

References

#6820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17216

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#35647 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83196

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92936.1 )

#122073 Collection of Institut Pasteur ; Curators of the CIP; CIP 104286
* These data were automatically processed and therefore are not curated

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Alistipes putredinis DSM 17216 DSM 17216

Alistipes putredinis DSM 17216

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