Name: Algibacter mikhailovii KCTC 127105
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134276

Type strain:

Species: Algibacter mikhailovii

Culture col. no.: KCTC 127105, LMG 23988, KMM 6171T, CIP 109749, KCTC 12710, KMM 6171

Strain history: CIP <- 2007, KCTC <- O. I. Nedashkovskaya, Vladivostok, Russia: strain KMM 6171

NCBI tax ID(s): 425498 (species)

SI-ID 264737

LMG 23988, KCTC 12710, CIP 109749

Section

Algibacter mikhailovii KCTC 127105 is an aerobe, Gram-negative, motile bacterium that was isolated from Sea urchin, Strongylocentrotus intermedius.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter mikhailovii**
	Full Scientific Name (LPSN)	Algibacter mikhailovii Nedashkovskaya et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32229]	Gram stain	negative
[Ref.: #120952]	Gram stain	negative

[Ref.: #32229]	Cell length	6 µm

[Ref.: #32229]	Cell width	0.35 µm

[Ref.: #32229]	Cell shape	rod-shaped
[Ref.: #120952]	Cell shape	rod-shaped

[Ref.: #32229]	Motility	yes
[Ref.: #120952]	Motility	no

[Ref.: #32229]	Flagellum arrangement	gliding

Information on culture and growth conditions Culture and growth conditions

[Ref.: #32832]

Culture medium

Marine agar (MA)

[Ref.: #32832]

Culture medium growth

[Ref.: #32832]

Culture medium composition

expand / minimize

[Ref.: #120952]

Culture medium

CIP Medium 13

[Ref.: #120952]

Culture medium growth

[Ref.: #120952]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #32229]	growth	04-37 °C
[Ref.: #32229]	optimum	24 °C
[Ref.: #32832]	growth	25 °C

[Ref.: #32229]	Temperature range	psychrophilic
[Ref.: #32832]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32229]	Oxygen tolerance	aerobe
[Ref.: #120952]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32229]		NaCl		growth	01-06	%
[Ref.: #32229]		NaCl		optimum	2.5	%

[Ref.: #32229]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32229]	arabinose ChEBI	+	carbon source
[Ref.: #32229]	esculin ChEBI	+	hydrolysis
[Ref.: #32229]	glucose ChEBI	+	carbon source
[Ref.: #32229]	lactose ChEBI	+	carbon source
[Ref.: #32229]	mannose ChEBI	+	carbon source
[Ref.: #32229]	nitrate ChEBI	+	reduction
[Ref.: #120952]	nitrate ChEBI	+	reduction
[Ref.: #120952]	nitrite ChEBI	-	reduction
[Ref.: #32229]	sorbitol ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #120952]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #32229]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32229]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32229]	catalase	+	1.11.1.6
[Ref.: #120952]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32229]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #32229]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120952]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120952]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120952]	12085	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #120952]	Sample type/isolated from	Sea urchin, Strongylocentrotus intermedius
[Ref.: #120952]	Geographic location (country and/or sea, region)	Troitsa bay, Sea of Japan
[Ref.: #120952]	Country	Russian Federation
[Ref.: #120952]	Country ISO 3 Code	RUS
[Ref.: #120952]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AM491809 (>99% sequence identity) for Algibacter mikhailovii subclade from Microbeatlas

Aquatic Samples	1234
Soil Samples	13
Animal Samples	57
Plant Samples	7
Total Samples	1311

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120952]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32229]	Algibacter mikhailovii partial 16S rRNA gene, type strain LMG 23988T	AM491809	1473	GenBank	425498 tax ID

[Ref.: #32229]

GC-content

35.1 mol%

Availability in culture collections External links

[Ref.: #32229]

Culture collection no.

KCTC 127105, LMG 23988, KMM 6171T, CIP 109749, KCTC 12710, KMM 6171

[Ref.: #91862]

SI-ID 264737

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans.	Park SC, Choe HN, Hwang YM, Baik KS, Kim SN, Lee YS, Jung JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.042341-0	2012	*
Phylogeny	Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter.	Nedashkovskaya OI, Vancanneyt M, Kim SB, Hoste B, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.65165-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32229

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28471 (see below)

#32832 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91862

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264737.1 )

#120952 Collection of Institut Pasteur ; Curators of the CIP; CIP 109749

#28471

IJSEM 2147 2007 ( DOI 10.1099/ijs.0.65165-0 , PubMed 17766889 )

* These data were automatically processed and therefore are not curated

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