Name: Anaerostipes caccae L1-92
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6339

Type strain:

Species: Anaerostipes caccae

Strain Designation: L1-92

Culture col. no.: DSM 14662, CIP 108612, NCIMB 13811, CCUG 47493, JCM 13470, KCTC 15019, AIP 10223

Strain history: CIP <- 2005, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10223 <- DSM <- S. Duncan: strain L1-92

NCBI tax ID(s): 411490 (strain), 105841 (species)

SI-ID 100506

DSM 14662, NCIMB 13811, CCUG 47493, JCM 13470, CIP 108612, VTT E-052773, KCTC 15019, LMG 28898

Other strains from Anaerostipes caccae

A. caccae CCUG 64219

Section

Anaerostipes caccae L1-92 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerostipes*
	Species	**Anaerostipes caccae**
	Full Scientific Name (LPSN)	Anaerostipes caccae Schwiertz et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #117086]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #117086]	Cell shape	rod-shaped

[Ref.: #117086]	Motility	no

[Ref.: #57715]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5469]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #5469]

Culture medium growth

[Ref.: #5469]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5469]

Culture medium composition

expand / minimize

[Ref.: #34329]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #34329]

Culture medium growth

[Ref.: #34329]

Culture medium composition

expand / minimize

[Ref.: #117086]

Culture medium

CIP Medium 20

[Ref.: #117086]

Culture medium growth

[Ref.: #117086]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #5469]	growth	37 °C
[Ref.: #34329]	growth	37 °C
[Ref.: #57715]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #5469]	Temperature range	mesophilic
[Ref.: #34329]	Temperature range	mesophilic
[Ref.: #57715]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5469]	Oxygen tolerance	anaerobe
[Ref.: #57715]	Oxygen tolerance	anaerobe
[Ref.: #117086]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

no Confidence in %96.491

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #117086]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #117086]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #117086]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #117086]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #117086]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117086]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117086]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117086]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #117086]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #5469]	12611	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #5469]	12610	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-
[Ref.: #5469]	12609	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117086]	11329	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5469]	Sample type/isolated from	human faeces
[Ref.: #5469]	Country	United Kingdom
[Ref.: #5469]	Country ISO 3 Code	GBR
[Ref.: #5469]	Continent	Europe

[Ref.: #57715]	Sample type/isolated from	Human feces
[Ref.: #57715]	Country	United Kingdom
[Ref.: #57715]	Country ISO 3 Code	GBR
[Ref.: #57715]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human feces

[Ref.: #117086]	Sample type/isolated from	Human, Faeces
[Ref.: #117086]	Country	United Kingdom
[Ref.: #117086]	Country ISO 3 Code	GBR
[Ref.: #117086]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ270487 (>99% sequence identity) for Anaerostipes caccae subclade from Microbeatlas

Aquatic Samples	980
Soil Samples	321
Animal Samples	75194
Plant Samples	183
Total Samples	76678

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5469]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117086]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5469]	Butyrate-producing bacterium L1-92 16S rRNA gene	AJ270487	1456	ENA	105841 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Anaerostipes caccae L1-92 DSM 14662	GCA_000154305	scaffold	GenBank	411490 tax ID
[Ref.: #67770]	Anaerostipes caccae L1-92 NCTC11032	GCA_900624715	contig	GenBank	411490 tax ID
[Ref.: #66792]	Anaerostipes caccae DSM 14662	411490.6	wgs	PATRIC	411490 tax ID	*
[Ref.: #66792]	Anaerostipes caccae L1-92 strain DSM 14662	411490.43	complete	PATRIC	411490 tax ID	*
[Ref.: #66792]	Anaerostipes caccae strain DSM 14662	105841.35	complete	PATRIC	105841 tax ID	*
[Ref.: #66792]	Anaerostipes caccae strain JCM 13470	105841.45	complete	PATRIC	105841 tax ID	*

[Ref.: #5469]	GC-content	46.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	46 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerostipes caccae L1-92 DSM 14662 NCBI: GCA_014131675.1
[Ref.: #69481]	spore-forming	yes	62	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerostipes caccae L1-92 DSM 14662 NCBI: GCA_014131675.1
[Ref.: #69480]	motile	no	85.371	no
[Ref.: #69480]	flagellated	no	88.862	no
[Ref.: #69480]	gram-positive	yes	87.012	no
[Ref.: #69480]	anaerobic	yes	98.661	no
[Ref.: #69480]	aerobic	no	98.448	no
[Ref.: #69480]	halophile	no	81.147	no
[Ref.: #69480]	spore-forming	yes	60.014	no
[Ref.: #69480]	thermophile	no	97.848	yes
[Ref.: #69480]	glucose-util	yes	92.297	no
[Ref.: #69480]	glucose-ferment	yes	67.701	no

Availability in culture collections External links

[Ref.: #5469]

Culture collection no.

DSM 14662, CIP 108612, NCIMB 13811, CCUG 47493, JCM 13470, KCTC 15019, AIP 10223

[Ref.: #75813]

SI-ID 100506

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Anaerostipes faecalis sp. nov., a new segmented filamentous bacterium isolated from swine faeces.	Choi SH, Choi JY, Park JE, Kim JS, Kang SW, Lee J, Lee MK, Lee JS, Lee JH, Jung H, Hur TY, Kim HB, Lee JH, Kim JK, Hong Y, Park SH	Antonie Van Leeuwenhoek	10.1007/s10482-021-01646-z	2021	*
Genetics	Complete Genome Sequence of Anaerostipes caccae Strain L1-92(T), a Butyrate-Producing Bacterium Isolated from Human Feces.	Morinaga K, Kusada H, Watanabe M, Tamaki H	Microbiol Resour Announc	10.1128/MRA.00056-21	2021	*
Metabolism	Lactate- and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans.	Moens F, Verce M, De Vuyst L	Int J Food Microbiol	10.1016/j.ijfoodmicro.2016.10.019	2016	*
Phylogeny	Anaerostipes rhamnosivorans sp. nov., a human intestinal, butyrate-forming bacterium.	Bui TPN, de Vos WM, Plugge CM	Int J Syst Evol Microbiol	10.1099/ijs.0.055061-0	2013	*
Phylogeny	Anaerostipes hadrus comb. nov., a dominant species within the human colonic microbiota; reclassification of Eubacterium hadrum Moore et al. 1976.	Allen-Vercoe E, Daigneault M, White A, Panaccione R, Duncan SH, Flint HJ, O'Neal L, Lawson PA	Anaerobe	10.1016/j.anaerobe.2012.09.002	2012	*
Phylogeny	Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes.	Eeckhaut V, Van Immerseel F, Pasmans F, De Brandt E, Haesebrouck F, Ducatelle R, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.015289-0	2009	*
Metabolism	In vitro kinetics of prebiotic inulin-type fructan fermentation by butyrate-producing colon bacteria: implementation of online gas chromatography for quantitative analysis of carbon dioxide and hydrogen gas production.	Falony G, Verschaeren A, De Bruycker F, De Preter V, Verbeke K, Leroy F, De Vuyst L	Appl Environ Microbiol	10.1128/AEM.00876-09	2009	*
Metabolism	Cross-feeding between Bifidobacterium longum BB536 and acetate-converting, butyrate-producing colon bacteria during growth on oligofructose.	Falony G, Vlachou A, Verbrugghe K, De Vuyst L	Appl Environ Microbiol	10.1128/AEM.01296-06	2006	*
Metabolism	Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.	Belenguer A, Duncan SH, Calder AG, Holtrop G, Louis P, Lobley GE, Flint HJ	Appl Environ Microbiol	10.1128/AEM.72.5.3593-3599.2006	2006	*
Phylogeny	Anaerostipes caccae gen. nov., sp. nov., a new saccharolytic, acetate-utilising, butyrate-producing bacterium from human faeces.	Schwiertz A, Hold GL, Duncan SH, Gruhl B, Collins MD, Lawson PA, Flint HJ, Blaut M	Syst Appl Microbiol	10.1078/0723-2020-00096	2002	*

References

#5469

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14662

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34329 ; Curators of the CIP;
#57715 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47493

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75813

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100506.1 )

#117086 Collection of Institut Pasteur ; Curators of the CIP; CIP 108612
* These data were automatically processed and therefore are not curated

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Anaerostipes caccae L1-92 DSM 14662

Anaerostipes caccae L1-92 DSM 14662

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