Name: Frankia saprophytica DSM 105290
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158363

Type strain:

Species: Frankia saprophytica

Culture col. no.: DSM 105290, CECT 9314, CN 3

Strain history: <- I. Nouioui, Univ. Newcastle, Newcastle upon Tyne, UK; CN3 <- M. S. Mirza, Agricultural University, Dept. of Microbiology; CN3

NCBI tax ID(s): 298655 (species)

SI-ID 405350

DSM 105290

Section

Frankia saprophytica DSM 105290 is an aerobe, chemoorganotroph, mesophilic bacterium that was isolated from root nodule of Coriaria nepalensis.

Gram-positive
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Frankiales*
	Family	*Frankiaceae*
	Genus	*Frankia*
	Species	**Frankia saprophytica**
	Full Scientific Name (LPSN)	Frankia saprophytica Nouioui et al. 2018

Synonym

Pseudofrankia saprophytica

Information on morphological and physiological properties Morphology

[Ref.: #65369]	Gram stain	positive

[Ref.: #65369]	Motility	no

[Ref.: #65369]	Colony color	greyish-white
[Ref.: #65369]	Incubation period	28 days
[Ref.: #65369]	Cultivation medium used	basic propionate broth

[Ref.: #65369]	Multicellular complex forming ability	yes
[Ref.: #65369]	Multicellular complex further description	branched substrate hyphae and multilocular sporangia develop

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65039]

Culture medium

MODIFIED BAP+ (PSA) MEDIUM FOR FRANKIA (DSMZ Medium 1660)

[Ref.: #65039]

Culture medium growth

[Ref.: #65039]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65039]

Culture medium composition

expand / minimize

[Ref.: #65369]

Culture medium

basic propionate broth

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65039]			growth	28 °C
[Ref.: #65369]			optimum	28 °C

[Ref.: #65039]	Temperature range	mesophilic
[Ref.: #65369]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65369]

Oxygen tolerance

aerobe

[Ref.: #65369]	Nutrition type	chemoorganotroph
[Ref.: #65369]	Nutrition type	heterotroph

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65369]	(S)-lactate ChEBI	-	carbon source
[Ref.: #65369]	1 % sodium lactate	+	growth
[Ref.: #65369]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65369]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #65369]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #65369]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #65369]	acetate ChEBI	+	growth
[Ref.: #65369]	acetoacetate ChEBI	+	carbon source
[Ref.: #65369]	beta-gentiobiose ChEBI	+	carbon source
[Ref.: #65369]	beta-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65369]	bromosuccinate ChEBI	+	carbon source
[Ref.: #65369]	cellobiose ChEBI	+	carbon source
[Ref.: #65369]	citrate ChEBI	+	carbon source
[Ref.: #65369]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #65369]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #65369]	D-malate ChEBI	+	carbon source
[Ref.: #65369]	D-serine ChEBI	+	nitrogen source
[Ref.: #65369]	dextrin ChEBI	-	carbon source
[Ref.: #65369]	fusidate ChEBI	+	growth
[Ref.: #65369]	glucuronamide ChEBI	+	carbon source
[Ref.: #65369]	guanidinium chloride ChEBI	-	nitrogen source
[Ref.: #65369]	L-malate ChEBI	+	carbon source
[Ref.: #65369]	lithium chloride ChEBI	+	growth
[Ref.: #65369]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #65369]	potassium tellurite ChEBI	+	growth
[Ref.: #65369]	sodium bromate ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65039]	Sample type/isolated from	root nodule of Coriaria nepalensis
[Ref.: #65039]	Geographic location (country and/or sea, region)	Nothern Pakistan, Muree (33° 54' 23.8'' N, 73° 23' 37.4'' E)
[Ref.: #65039]	Country	Pakistan
[Ref.: #65039]	Country ISO 3 Code	PAK
[Ref.: #65039]	Continent	Asia
[Ref.: #65039]	Geographic location	33.9066°/73.3937°

[Ref.: #65369]	Sample type/isolated from	root nodules of Coriaria nepalensis
[Ref.: #65369]	Geographic location (country and/or sea, region)	Muree
[Ref.: #65369]	Country	Pakistan
[Ref.: #65369]	Country ISO 3 Code	PAK
[Ref.: #65369]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Root nodule
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF960832 (>99% sequence identity) for Frankia from Microbeatlas

Aquatic Samples	69
Soil Samples	787
Animal Samples	34
Plant Samples	60
Total Samples	950

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65039]	Frankia saprophytica strain CN3 16S ribosomal RNA gene, partial sequence	MF960832	1388	ENA	298655 tax ID

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GC-content

71.8 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65039]

Culture collection no.

DSM 105290, CECT 9314, CN 3

[Ref.: #111168]

SI-ID 405350

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frankia saprophytica sp. nov., an atypical, non-infective (Nod-) and non-nitrogen fixing (Fix-) actinobacterium isolated from Coriaria nepalensis root nodules.	Nouioui I, Ghodhbane-Gtari F, Klenk HP, Gtari M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002633	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65039

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105290

#65369

Imen Nouioui, Faten Ghodhbane-Gtari, Hans-Peter Klenk, Maher Gtari: Frankia saprophytica sp. nov., an atypical, non-infective (Nod–) and non-nitrogen fixing (Fix–) actinobacterium isolated from Coriaria nepalensis root nodules. IJSEM 68: 1090 - 1095 2018 ( DOI 10.1099/ijsem.0.002633 , PubMed 29458682 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111168

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405350.1 )

* These data were automatically processed and therefore are not curated

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