Name: Endozoicomonas atrinae WP70
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130346

Type strain:

Species: Endozoicomonas atrinae

Strain Designation: WP70

Culture col. no.: DSM 100061, JCM 19190, KACC 17474

Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; WP70.

NCBI tax ID(s): 1333660 (species)

SI-ID 407598

DSM 100061

Section

Endozoicomonas atrinae WP70 is a mesophilic bacterium that was isolated from intestinal tract of a comb pen shell Atrina pectinata.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Endozoicomonadaceae*
	Genus	*Endozoicomonas*
	Species	**Endozoicomonas atrinae**
	Full Scientific Name (LPSN)	Endozoicomonas atrinae Hyun et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22052]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22052]

Culture medium growth

[Ref.: #22052]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22052]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22052]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22052]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22052]	Sample type/isolated from	intestinal tract of a comb pen shell Atrina pectinata
[Ref.: #22052]	Host species	Atrina pectinata
[Ref.: #22052]	Geographic location (country and/or sea, region)	southern sea of Yeosu
[Ref.: #22052]	Country	Republic of Korea
[Ref.: #22052]	Country ISO 3 Code	KOR
[Ref.: #22052]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Intestinal trct of a comb pen shel, Atrina pectinata
[Ref.: #67770]	Host species	Atrina pectinata
[Ref.: #67770]	Geographic location (country and/or sea, region)	southern sea of Yeosu in Korea
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC878324 (>99% sequence identity) for Endozoicomonas atrinae from Microbeatlas

Aquatic Samples	958
Soil Samples	34
Animal Samples	116
Plant Samples	1
Total Samples	1109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22052]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22052]	Endozoicomonas atrinae strain WP70 16S ribosomal RNA gene, partial sequence	KC878324	1465	ENA	1333660 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Endozoicomonas atrinae WP70	GCA_001647025	scaffold	GenBank	1333660 tax ID
[Ref.: #66792]	Endozoicomonas atrinae WP70	2775507270	complete	JGI IMG/M	1333660 tax ID	*

[Ref.: #22052]

GC-content

50.5 mol%

Availability in culture collections External links

[Ref.: #22052]

Culture collection no.

DSM 100061, JCM 19190, KACC 17474

[Ref.: #88878]

SI-ID 407598

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata.	Hyun DW, Shin NR, Kim MS, Oh SJ, Kim PS, Whon TW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.060780-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22052

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100061

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88878

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407598.1 )

* These data were automatically processed and therefore are not curated

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