Name: Actinoplanes atraurantiacus Y16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23114

Type strain:

Species: Actinoplanes atraurantiacus

Strain Designation: Y16

Culture col. no.: DSM 45850, CGMCC 4.6857, JCM 17700

Strain history: J. Zhang Y16.

NCBI tax ID(s): 1036182 (species)

SI-ID 397613

DSM 45850

Section

Actinoplanes atraurantiacus Y16 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes atraurantiacus**
	Full Scientific Name (LPSN)	Actinoplanes atraurantiacus Zhang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30488]	Gram stain	positive

[Ref.: #69446]	Colony color	Golden yellow (1004)
[Ref.: #69446]	Cultivation medium used	ISP 5

[Ref.: #69446]	Colony color	Dahlia yellow (1033)
[Ref.: #69446]	Cultivation medium used	ISP 3

[Ref.: #69446]	Colony color	Daffodil yellow (1007)
[Ref.: #69446]	Cultivation medium used	ISP 4

[Ref.: #69446]	Colony color	Brown beige (1011)
[Ref.: #69446]	Cultivation medium used	ISP 7

[Ref.: #69446]	Colony color	Beige brown (8024)
[Ref.: #69446]	Cultivation medium used	suter with tyrosine

[Ref.: #69446]	Colony color	Maize yellow (1006)
[Ref.: #69446]	Cultivation medium used	suter without tyrosine

[Ref.: #69446]	Colony color	Pastel yellow (1034)
[Ref.: #69446]	Cultivation medium used	ISP 6

[Ref.: #69446]	Colony color	Yellow orange (2000)
[Ref.: #69446]	Cultivation medium used	ISP 2

[Ref.: #30488]	Pigment production	yes
[Ref.: #69446]	Pigment production	yes
[Ref.: #69446]	Pigmentation color	Beige brown (8024), clay brown (8003)
[Ref.: #69446]	Pigment name	soluble pigment

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 2

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 3

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 4

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 5

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 6

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	ISP 7

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69446]	Multicellular complex forming ability	no
[Ref.: #69446]	Multicellular complex name	Aerial mycelium
[Ref.: #69446]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69446]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69446]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69446]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69446]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19176]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19176]

Culture medium growth

[Ref.: #19176]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19176]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19176]

Culture medium growth

[Ref.: #19176]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19176]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19176]

Culture medium growth

[Ref.: #19176]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19176]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19176]	growth	28 °C
[Ref.: #30488]	growth	25-30 °C
[Ref.: #30488]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #19176]	Temperature range	mesophilic
[Ref.: #30488]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30488]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30488]

Oxygen tolerance

aerobe

[Ref.: #30488]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30488]		NaCl		growth	<3	%
[Ref.: #69446]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69446]	arabinose ChEBI	+	growth
[Ref.: #30488]	cellobiose ChEBI	+	carbon source
[Ref.: #69446]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69446]	fructose ChEBI	+	growth
[Ref.: #30488]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30488]	glucose ChEBI	+	carbon source
[Ref.: #69446]	glucose ChEBI	+	growth
[Ref.: #30488]	glycogen ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69446]	inositol ChEBI	+	growth
[Ref.: #30488]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30488]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30488]	mannitol ChEBI	+	carbon source
[Ref.: #30488]	mannose ChEBI	+	carbon source
[Ref.: #69446]	mannose ChEBI	+/-	growth
[Ref.: #30488]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69446]	raffinose ChEBI	+/-	growth
[Ref.: #30488]	rhamnose ChEBI	+	carbon source
[Ref.: #69446]	rhamnose ChEBI	+/-	growth
[Ref.: #30488]	salicin ChEBI	+	carbon source
[Ref.: #30488]	sucrose ChEBI	+	carbon source
[Ref.: #69446]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30488]	xylose ChEBI	+	carbon source
[Ref.: #69446]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30488]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #30488]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30488]	gelatinase	+
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #30488]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69446]	3939	-	-	-	+	-	+	-	+	+	+/-	+	not determinedn.d.	+	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69446]	6123	not determinedn.d.	+	+/-	+/-	-	+	+/-	-	+/-	+	+	+	+/-	+	-	+/-	+	+	+/-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	mannosylglycerate biosynthesis	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	myo-inositol biosynthesis	100	10 of 10
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	grixazone biosynthesis	100	2 of 2
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	degradation of hexoses	94.44	17 of 18
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	heme metabolism	92.86	13 of 14
[Ref.: #66794]	urea cycle	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	vitamin B12 metabolism	88.24	30 of 34
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	degradation of sugar acids	84	21 of 25
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	oxidative phosphorylation	73.63	67 of 91
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	carotenoid biosynthesis	63.64	14 of 22
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	arachidonic acid metabolism	61.11	11 of 18
[Ref.: #66794]	chlorophyll metabolism	61.11	11 of 18
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	glycine metabolism	60	6 of 10
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	methanogenesis from CO2	41.67	5 of 12
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19176]	Sample type/isolated from	forest soil
[Ref.: #19176]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #19176]	Country	China
[Ref.: #19176]	Country ISO 3 Code	CHN
[Ref.: #19176]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ839788 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	4
Soil Samples	33
Animal Samples	3
Plant Samples	6
Total Samples	46

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19176]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19176]	Actinoplanes atraurantiacus strain Y16 16S ribosomal RNA gene, partial sequence	HQ839788	1402	ENA	1036182 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinoplanes atraurantiacus CGMCC 4.6857	GCA_900215205	scaffold	GenBank	1036182 tax ID
[Ref.: #66792]	Actinoplanes atraurantiacus strain CGMCC 4.6857	1036182.3	wgs	PATRIC	1036182 tax ID	*
[Ref.: #66792]	Actinoplanes atraurantiacus CGMCC 4.6857	2675903134	draft	JGI IMG/M	1036182 tax ID	*

[Ref.: #19176]	GC-content	70.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30488]	GC-content	70.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes atraurantiacus strain CGMCC 4.6857 PATRIC: 1036182.3
[Ref.: #69480]	motile	yes	63.913	no
[Ref.: #69480]	flagellated	no	88.575	no
[Ref.: #69480]	gram-positive	yes	87.755	yes
[Ref.: #69480]	anaerobic	no	98.831	yes
[Ref.: #69480]	aerobic	yes	90.892	yes
[Ref.: #69480]	halophile	no	94.431	yes
[Ref.: #69480]	spore-forming	yes	91.782	yes
[Ref.: #69480]	thermophile	no	99.502	yes
[Ref.: #69480]	glucose-util	yes	90.665	yes
[Ref.: #69480]	glucose-ferment	no	88.276	no

Availability in culture collections External links

[Ref.: #19176]

Culture collection no.

DSM 45850, CGMCC 4.6857, JCM 17700

[Ref.: #87351]

SI-ID 397613

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes atraurantiacus sp. nov., isolated from soil.	Zhang Y, Zhang J, Fan L, Pang H, Xin Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijs.0.037226-0	2011	*

References

#19176

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45850

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30488

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26821 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69446

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87351

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397613.1 )

#26821

IJSEM 2533 2012 ( DOI 10.1099/ijs.0.037226-0 , PubMed 22180611 )

* These data were automatically processed and therefore are not curated

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Actinoplanes atraurantiacus strain CGMCC 4.6857

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