Mycobacterium aubagnense U8 | Type strain | DSM 45150, CCUG 50186, CIP 108543

Strain identifier

BacDive ID: 8549

Type strain:

Species: Mycobacterium aubagnense

Strain Designation: U8

Culture col. no.: DSM 45150, CCUG 50186, CIP 108543

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #15461]	Domain	Bacteria
[Ref.: #15461]	Phylum	Actinobacteria
[Ref.: #15461]	Class	Actinobacteria
[Ref.: #15461]	Order	Actinomycetales
[Ref.: #15461]	Family	Mycobacteriaceae
[Ref.: #15461]	Genus	Mycobacterium
[Ref.: #15461]	Species	Mycobacterium aubagnense
[Ref.: #15461]	Full Scientific Name	Mycobacterium aubagnense Adékambi et al. 2006
[Ref.: #15461]	Strain Designation	U8
[Ref.: #15461]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Mycobacteriaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Mycobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:324 (AL)
[Ref.: #20215]	Species	Mycobacterium aubagnense	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 56:140*
[Ref.: #20215]	Full Scientific Name	Mycobacterium aubagnense Adékambi et al. 2006

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #15461]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645), 28°C

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Culture medium growth

[Ref.: #15461]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #36346]

Culture medium

MEDIUM 72- for trypto casein soja agar

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Culture medium growth

[Ref.: #36346]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15461]			growth	28 ̊C
[Ref.: #36346]			growth	30 ̊C

[Ref.: #15461]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #15461]

Sample type/isolated from

bronchial aspiration

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Geographic location (country and/or sea, region)

Marseille

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Country

France

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Continent

Europe

Isolation sources categories

#Medical	#Patient	#Aspirate
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #15461]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #15461]	GenBank Direct submission	Mycobacterium aubagnense CIP 108543 16S ribosomal RNA gene, partial sequence	AY859683	1482	319707
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Mycobacterium aubagnense ITS1, type strain CCUG50186T	AM421290	302	319707	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Mycobacterium aubagnense partial gyrB gene for DNA gyrase subunit B, type strain CCUG50186T	AM421322	314	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense CIP 108543 65 kDa heat shock protein (hsp65) gene, partial cds	AY859677	441	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense CIP 108543 RecA (recA) gene, complete cds	AY859689	1102	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense CIP 108543 RNA polymerase subunit B (rpoB) gene, complete cds	AY859694	3927	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense CIP 108543 SodA (sodA) gene, partial cds	AY859707	540	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 tmRNA (ssrA) gene, partial sequence	DQ985999	331	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 elongation factor Tu (tuf) gene, partial cds	DQ986083	649	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 RNA polymerase (rpoB) gene, partial cds	DQ987716	386	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 65 kDa heat shock protein (hsp65) gene, partial cds	DQ987727	415	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 superoxide dismutase (sod) gene, partial cds	DQ987737	419	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 16S ribosomal RNA gene, partial sequence	DQ987739	528	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 SmpB (smpB) gene, partial cds	EF686798	312	319707	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium aubagnense strain CCUG 50186 preprotein translocase SecA1 (secA1) gene, partial cds	FJ442827	466	319707	*

Availability in culture collectionsStrain availability

[Ref.: #15461]

Culture collection no.

DSM 45150, CCUG 50186, CIP 108543

[Ref.: #15461]	Strain history	<- CIP; CIP 108543 <- M. Drancourt,Hosp. La Timone, Marseille,France; U8
[Ref.: #36346]	Strain history	2004, M. Drancourt, Hosp. La Timone, Marseille, France: strain U8

[Ref.: #20218]

Associated Passport(s) in StrainInfo

840797, 674903, 674703

References

#15461

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45150

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36346 ; Curators of the CIP;
* These References are textmined

Search for species Mycobacterium aubagnense in external resources:
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