Mycobacterium parmense Fi-14400, MUP 1182 | Type strain | DSM 44553, CIP 107385

Strain identifier

BacDive ID: 8493

Type strain:

Species: Mycobacterium parmense

Strain Designation: Fi-14400, MUP 1182

Culture col. no.: DSM 44553, CIP 107385

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #11750]	Domain	Bacteria
[Ref.: #11750]	Phylum	Actinobacteria
[Ref.: #11750]	Class	Actinobacteria
[Ref.: #11750]	Order	Actinomycetales
[Ref.: #11750]	Family	Mycobacteriaceae
[Ref.: #11750]	Genus	Mycobacterium
[Ref.: #11750]	Species	Mycobacterium parmense
[Ref.: #11750]	Full Scientific Name	Mycobacterium parmense Fanti et al. 2004
[Ref.: #11750]	Strain Designation	Fi-14400, MUP 1182
[Ref.: #11750]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Mycobacteriaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Mycobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:324 (AL)
[Ref.: #20215]	Species	Mycobacterium parmense	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 54:1126*
[Ref.: #20215]	Full Scientific Name	Mycobacterium parmense Fanti et al. 2004

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #29969]	Cell shape	rod-shaped
[Ref.: #29969]	Motility	no

[Ref.: #19868]	Colony color	Zinc yellow
[Ref.: #19868]	Incubation period	10-14 days
[Ref.: #19868]	Cultivation medium used	5006

[Ref.: #19868]	Colony color	Zinc yellow
[Ref.: #19868]	Incubation period	10-14 days
[Ref.: #19868]	Cultivation medium used	MB7H10

[Ref.: #19868]	Colony color	Zinc yellow
[Ref.: #19868]	Incubation period	10-14 days
[Ref.: #19868]	Cultivation medium used	MB7H11

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29969]		catalase	+	1.11.1.6
[Ref.: #29969]		urease	+	3.5.1.5

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19868]	356	-	-	-	+	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19868]	680	not determinedn.d.	+	+	+	+	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29969]		Tween 80	+	carbon source

[Ref.: #29969]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #11750]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645), 37°C

[Ref.: #11750]

Culture medium growth

[Ref.: #11750]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #19868]

Culture medium

MB7H10

[Ref.: #19868]

Culture medium growth

[Ref.: #19868]

Culture medium composition

expand / minimize

[Ref.: #19868]

Culture medium

MB7H11

[Ref.: #19868]

Culture medium growth

[Ref.: #19868]

Culture medium composition

expand / minimize

[Ref.: #19868]

Culture medium

5006

[Ref.: #19868]

Culture medium growth

[Ref.: #19868]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11750]	growth	37 ̊C
[Ref.: #19868]	optimum	37 ̊C
[Ref.: #29969]	growth	25-37 ̊C
[Ref.: #29969]	optimum	31 ̊C

[Ref.: #11750]	Temperature range	mesophilic
[Ref.: #19868]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #11750]

Sample type/isolated from

cervical lymphnode of a child

[Ref.: #11750]

Geographic location (country and/or sea, region)

Parma

[Ref.: #11750]

Country

Italy

[Ref.: #11750]

Continent

Europe

Isolation sources categories

#Medical	#Patient	#Child
#Host Body-Site	#Organ	#Lymph nodes

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #11750]	Pathogenicity (human)	yes
[Ref.: #11750]	Biosafety level	1	Risk group (German classification)
[Ref.: #19868]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #11750]	GenBank Direct submission		AF466821
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 superoxide dismutase (sod) gene, partial cds	AY943182	436	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 RNA polymerase (rpoB) gene, partial cds	AY943191	423	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 65 kDa heat shock protein (hsp65) gene, partial cds	AY943202	385	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 16S ribosomal RNA gene, partial sequence	AY943212	495	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 tmRNA (ssrA) gene, partial sequence	DQ480272	305	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 elongation factor Tu (tuf) gene, partial cds	DQ986045	649	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 SmpB (smpB) gene, partial cds	EF686777	312	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 65 kDa heat shock protein (hsp65) gene, partial cds	HM022199	401	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	HM022201	1795	185642	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium parmense strain CIP 107385 RNA polymerase beta-subunit (rpoB) gene, partial cds	HM022211	720	185642	*

Availability in culture collectionsStrain availability

[Ref.: #11750]

Culture collection no.

DSM 44553, CIP 107385

[Ref.: #11750]

Strain history

<- E. Tortoli; Fi-14400 <- F. Fanti

[Ref.: #20218]

Associated Passport(s) in StrainInfo

379577, 379576

References

#11750

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44553

#19868

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29969

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #26338 (see below)

#26338

IJSEM 1123 2004 ( DOI 10.1099/ijs.0.02760-0 )

* These References are textmined

Search for species Mycobacterium parmense in external resources:
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