Pleomorphomonas oryzae F-7 | Type strain | DSM 16300, IAM 15079

Strain identifier

BacDive ID: 7226

Type strain:

Species: Pleomorphomonas oryzae

Strain Designation: F-7

Culture col. no.: DSM 16300, IAM 15079

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #6350]	Domain	Bacteria
[Ref.: #6350]	Phylum	Proteobacteria
[Ref.: #6350]	Class	Alphaproteobacteria
[Ref.: #6350]	Order	Rhizobiales
[Ref.: #6350]	Family	Methylocystaceae
[Ref.: #6350]	Genus	Pleomorphomonas
[Ref.: #6350]	Species	Pleomorphomonas oryzae
[Ref.: #6350]	Full Scientific Name	Pleomorphomonas oryzae Xie and Yokota 2005
[Ref.: #6350]	Strain Designation	F-7
[Ref.: #6350]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Methylocystaceae
[Ref.: #20215]	Genus	Pleomorphomonas	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:1236*
[Ref.: #20215]	Species	Pleomorphomonas oryzae	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:1236*
[Ref.: #20215]	Full Scientific Name	Pleomorphomonas oryzae Xie and Yokota 2005

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31363]	Gram stain	negative
[Ref.: #31363]	Cell length	3 µm
[Ref.: #31363]	Cell width	0.75 µm
[Ref.: #31363]	Cell shape	rod-shaped
[Ref.: #31363]	Motility	no

	Enzyme	Enzyme activity	EC number
[Ref.: #31363]	catalase	+	1.11.1.6
[Ref.: #31363]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31363]	urease	+	3.5.1.5

	Metabolite production	Metabolite	Production
[Ref.: #31363]		Indole	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31363]		Indole	+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31363]	Acetic acid	+	carbon source
[Ref.: #31363]	Arabinose	+	carbon source
[Ref.: #31363]	Aspartic acid	+	carbon source
[Ref.: #31363]	Cellobiose	+	carbon source
[Ref.: #31363]	Fructose	+	carbon source
[Ref.: #31363]	Galactose	+	carbon source
[Ref.: #31363]	Gluconic acid	+	carbon source
[Ref.: #31363]	Glucose	+	carbon source
[Ref.: #31363]	Glycerol	+	carbon source
[Ref.: #31363]	Lactose	+	carbon source
[Ref.: #31363]	Malic acid	+	carbon source
[Ref.: #31363]	Mannitol	+	carbon source
[Ref.: #31363]	Mannose	+	carbon source
[Ref.: #31363]	Nitrate	+	reduction
[Ref.: #31363]	Proline	+	carbon source
[Ref.: #31363]	Pyruvic acid	+	carbon source
[Ref.: #31363]	Raffinose	+	carbon source
[Ref.: #31363]	Rhamnose	+	carbon source
[Ref.: #31363]	Ribose	+	carbon source
[Ref.: #31363]	Salicin	+	carbon source
[Ref.: #31363]	Serine	+	carbon source
[Ref.: #31363]	Sorbitol	+	carbon source
[Ref.: #31363]	Sucrose	+	carbon source
[Ref.: #31363]	Trehalose	+	carbon source
[Ref.: #31363]	Xylose	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #31363]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #6350]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 27°C

[Ref.: #6350]

Culture medium growth

[Ref.: #6350]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6350]			growth	27 ̊C

[Ref.: #6350]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #6350]

Sample type/isolated from

Oryza sativa

[Ref.: #6350]

Country

Japan

[Ref.: #6350]

Continent

Asia

Isolation sources categories

#Host-associates

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #6350]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #31363]

GC-content

62.6 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00001.1_C, whole genome shotgun sequence	AUHB01000001	652348	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00002.2_C, whole genome shotgun sequence	AUHB01000002	509324	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00003.3_C, whole genome shotgun sequence	AUHB01000003	482060	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00004.4_C, whole genome shotgun sequence	AUHB01000004	377103	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00005.5_C, whole genome shotgun sequence	AUHB01000005	364828	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00006.6_C, whole genome shotgun sequence	AUHB01000006	356878	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00007.7_C, whole genome shotgun sequence	AUHB01000007	263898	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00008.8_C, whole genome shotgun sequence	AUHB01000008	242312	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00009.9_C, whole genome shotgun sequence	AUHB01000009	239146	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00010.10_C, whole genome shotgun sequence	AUHB01000010	229470	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00011.11_C, whole genome shotgun sequence	AUHB01000011	202194	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00012.12_C, whole genome shotgun sequence	AUHB01000012	194048	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00013.13_C, whole genome shotgun sequence	AUHB01000013	179879	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00014.14_C, whole genome shotgun sequence	AUHB01000014	153147	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00015.15_C, whole genome shotgun sequence	AUHB01000015	148117	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00016.16_C1, whole genome shotgun sequence	AUHB01000016	47595	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00016.16_C2, whole genome shotgun sequence	AUHB01000017	91099	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00017.17_C, whole genome shotgun sequence	AUHB01000018	104441	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00018.18_C, whole genome shotgun sequence	AUHB01000019	102520	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00019.19_C, whole genome shotgun sequence	AUHB01000020	74812	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00020.20_C, whole genome shotgun sequence	AUHB01000021	54219	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00021.21_C, whole genome shotgun sequence	AUHB01000022	45164	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00022.22_C, whole genome shotgun sequence	AUHB01000023	27379	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00023.23_C, whole genome shotgun sequence	AUHB01000024	18755	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00024.24_C, whole genome shotgun sequence	AUHB01000025	17404	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00025.25_C, whole genome shotgun sequence	AUHB01000026	12132	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00026.26_C, whole genome shotgun sequence	AUHB01000027	8368	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00027.27_C, whole genome shotgun sequence	AUHB01000028	8228	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00028.28_C, whole genome shotgun sequence	AUHB01000029	4831	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00029.29_C, whole genome shotgun sequence	AUHB01000030	3546	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00030.30_C, whole genome shotgun sequence	AUHB01000031	3442	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00031.31_C, whole genome shotgun sequence	AUHB01000032	2232	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00032.32_C, whole genome shotgun sequence	AUHB01000033	1927	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00033.33_C, whole genome shotgun sequence	AUHB01000034	1632	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00034.34_C, whole genome shotgun sequence	AUHB01000035	1528	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00035.35_C, whole genome shotgun sequence	AUHB01000036	1511	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00036.36_C, whole genome shotgun sequence	AUHB01000037	1283	1122963	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Pleomorphomonas oryzae DSM 16300 G522DRAFT_scaffold00037.37_C, whole genome shotgun sequence	AUHB01000038	1122	1122963	*
[Ref.: #6350]	DDBJ EMBL Direct submission		AB159680
[Ref.: #6350]	INSDC (WGS)	Pleomorphomonas oryzae DSM 16300, whole genome shotgun sequencing project	AUHB00000000	38	1122963

Availability in culture collectionsStrain availability

[Ref.: #6350]

Culture collection no.

DSM 16300, IAM 15079

[Ref.: #6350]

Strain history

<- CH.-H. Xie; F-7 <- 1982

[Ref.: #20218]

Associated Passport(s) in StrainInfo

387846, 387848

References

#6350

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16300

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31363

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #27676 (see below)

#27676

IJSEM 1233 2005 ( DOI 10.1099/ijs.0.63406-0 )

* These References are textmined

Search for species Pleomorphomonas oryzae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF