Pelobacter propionicus OttBd1 | Type strain | DSM 2379, NBRC 103807

Strain identifier

BacDive ID: 4219

Type strain:

Species: Pelobacter propionicus

Strain Designation: OttBd1

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #1061]	Domain	Bacteria
[Ref.: #1061]	Phylum	Proteobacteria
[Ref.: #1061]	Class	Deltaproteobacteria
[Ref.: #1061]	Order	Desulfuromonadales
[Ref.: #1061]	Family	Desulfuromonadaceae
[Ref.: #1061]	Genus	Pelobacter
[Ref.: #1061]	Species	Pelobacter propionicus
[Ref.: #1061]	Full Scientific Name	Pelobacter propionicus Schink 1984
[Ref.: #1061]	Strain Designation	OttBd1
[Ref.: #1061]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Deltaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Desulfuromonadaceae		Int. J. Syst. Evol. Microbiol. 56:2
[Ref.: #20215]	Genus	Pelobacter	gen. nov. (VL)	Int. J. Syst. Bacteriol. 33:896
[Ref.: #20215]	Species	Pelobacter propionicus	sp. nov. (VL)	Int. J. Syst. Bacteriol. 34:356
[Ref.: #20215]	Full Scientific Name	Pelobacter propionicus Schink 1984

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #1061]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1061]

Culture medium

PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298), 30°C, anaerobic

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Culture medium growth

[Ref.: #1061]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1061]			growth	30 ̊C

[Ref.: #1061]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #1061]

Sample type/isolated from

creek mud

[Ref.: #1061]

Geographic location (country and/or sea, region)

Ottensen near Hannover

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Country

Germany

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Continent

Europe

Isolation sources categories

#Environmental	#Aquatic	#River (creek)
#Environmental	#Terrestrial	#Mud (sludge)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1061]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #1061]

GC-content

57.4 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	INSDC Sequence	Sequence 233 from Patent WO2007110314	FB332707	1149	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 1464 from Patent WO2007110314	FB333938	849	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 2772 from Patent WO2007110314	FB335246	756	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 101124 from Patent EP2096177	HB968449	810	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 106594 from Patent EP2096177	HB973919	768	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 106596 from Patent EP2096177	HB973921	786	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 10501 from Patent WO2010046221	HC753410	1242	338966	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Sequence 101124 from Patent EP2199304	HD025859	810	338966	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Sequence 106594 from Patent EP2199304	HD031329	768	338966	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Sequence 106596 from Patent EP2199304	HD031331	786	338966	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Pelobacter propionicus DSM 2379 transfer-messenger mRNA Pelob_propi_2379, single chain mature transcript	HG788731	354	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 233 from Patent EP2221382	HH764046	1149	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 1464 from Patent EP2221382	HH765277	849	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 2772 from Patent EP2221382	HH766585	756	338966	*
[Ref.: #20218]	INSDC Sequence	Sequence 140 from Patent WO2013114363	JC295696	198	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-CGC-1-1 gene	LK012238	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-GGC-1-1 gene	LK012239	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-TGC-1-1 gene	LK012240	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-TGC-1-2 gene	LK012241	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-TGC-1-3 gene	LK012242	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ala-TGC-1-4 gene	LK012243	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Arg-ACG-1-1 gene	LK012244	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Arg-CCG-1-1 gene	LK012245	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Arg-TCG-1-1 gene	LK012247	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Arg-TCT-1-1 gene	LK012248	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Asn-GTT-1-1 gene	LK012249	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Asp-GTC-1-1 gene	LK012250	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Asp-GTC-1-2 gene	LK012251	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Cys-GCA-1-1 gene	LK012252	75	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Gln-CTG-1-1 gene	LK012253	74	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Gln-TTG-1-1 gene	LK012254	75	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Glu-TTC-1-1 gene	LK012255	78	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Gly-GCC-1-1 gene	LK012257	75	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Gly-TCC-1-1 gene	LK012258	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-His-GTG-1-1 gene	LK012259	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ile-GAT-1-1 gene	LK012260	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ile-GAT-1-2 gene	LK012261	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ile-GAT-1-3 gene	LK012262	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ile-GAT-1-4 gene	LK012263	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Leu-CAA-1-1 gene	LK012264	86	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Leu-CAG-1-1 gene	LK012265	87	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Leu-GAG-1-1 gene	LK012266	87	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Leu-TAA-1-1 gene	LK012267	87	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Leu-TAG-1-1 gene	LK012268	85	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Lys-CTT-1-1 gene	LK012269	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Lys-TTT-1-1 gene	LK012270	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Met-CAT-1-1 gene	LK012271	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Met-CAT-2-1 gene	LK012272	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Phe-GAA-1-1 gene	LK012273	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Pro-CGG-1-1 gene	LK012274	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Pro-GGG-1-1 gene	LK012275	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Pro-TGG-1-1 gene	LK012276	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ser-CGA-1-1 gene	LK012277	88	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ser-GCT-1-1 gene	LK012278	93	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ser-GGA-1-1 gene	LK012279	91	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Ser-TGA-1-1 gene	LK012280	88	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Thr-CGT-1-1 gene	LK012281	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Thr-CGT-1-2 gene	LK012282	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Thr-GGT-1-1 gene	LK012283	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Thr-TGT-1-1 gene	LK012284	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Trp-CCA-1-1 gene	LK012285	77	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Tyr-GTA-1-1 gene	LK012286	85	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Val-CAC-1-1 gene	LK012287	75	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Val-GAC-1-1 gene	LK012288	75	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-Val-TAC-1-1 gene	LK012289	76	338966	*
[Ref.: #20218]	INSDC Sequence	TPA: Pelobacter propionicus DSM 2379 tRNA-iMet-CAT-1-1 gene	LK012290	77	338966	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	P.propionicus 16S rRNA	X70954	1553	29543	*
[Ref.: #1061]	GenBank Genome project data	Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence	CP000483	202397	338966
[Ref.: #1061]	GenBank Genome project data	Pelobacter propionicus DSM 2379 plasmid pPRO2, complete sequence	CP000484	30722	338966
[Ref.: #1061]	GenBank Genome project data	Pelobacter propionicus DSM 2379, complete genome	CP000482	4008000	338966

Availability in culture collectionsStrain availability

[Ref.: #1061]

Culture collection no.

DSM 2379, NBRC 103807

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Strain history

<- B. Schink, OttBd1

[Ref.: #20218]

Associated Passport(s) in StrainInfo

157958, 764490

References

#1061

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2379

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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