Variovorax paradoxus 351, B13-0-1 D | Type strain | DSM 30034, ATCC 17713, DSM 66, IFO 15149, NBRC 15149

Strain identifier

BacDive ID: 3008

Type strain:

Species: Variovorax paradoxus

Strain Designation: 351, B13-0-1 D

Culture col. no.: DSM 30034, ATCC 17713, DSM 66, IFO 15149, NBRC 15149

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #9096]	Domain	Bacteria
[Ref.: #9096]	Phylum	Proteobacteria
[Ref.: #9096]	Class	Betaproteobacteria
[Ref.: #9096]	Order	Burkholderiales
[Ref.: #9096]	Family	Comamonadaceae
[Ref.: #9096]	Genus	Variovorax
[Ref.: #9096]	Species	Variovorax paradoxus
[Ref.: #9096]	Full Scientific Name	Variovorax paradoxus (Davis 1969) Willems et al. 1991
[Ref.: #9096]	Strain Designation	351, B13-0-1 D
[Ref.: #9096]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Betaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Comamonadaceae
[Ref.: #20215]	Genus	Variovorax	gen. nov. (VP)	Int. J. Syst. Bacteriol. 41:446*
[Ref.: #20215]	Species	Variovorax paradoxus	comb. nov. (VP)	Int. J. Syst. Bacteriol. 41:447*
[Ref.: #20215]	Full Scientific Name	Variovorax paradoxus (Davis 1969) Willems et al. 1991

[Ref.: #20215]	Synonym	Alcaligenes paradoxus
[Ref.: #20215]	Synonym	Hydrogenomonas pantotropha

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 30°C

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

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Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81), 30°C

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

[Ref.: #36606]

Culture medium

MEDIUM 72- for trypto casein soja agar

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9096]			growth	30 ̊C
[Ref.: #36606]			growth	25 ̊C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

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Sample type/isolated from

soil

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #9096]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #9096]	GC-content	68.4 mol%
[Ref.: #9096]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus gene for 16S rRNA, partial sequence, strain: DSM 30034	AB622219	1483	34073	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus DNA, 16S-23S rRNA gene internal transcribed spacer, strain: DSM 30034	AB622229	634	34073	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Variovorax paradoxus (strain LMG 30043 T) 5S ribosomal RNA	AJ131602	115	34073	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Variovorax paradoxus asfA gene for putative oxidoreductase, type strain DSM30034	AM269514	1623	34073	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Variovorax paradoxus asfB gene for putative ferredoxin, type strain DSM30034	AM269516	330	34073	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Variovorax paradoxus 16S rRNA gene, strain DSM 66	AJ420329	1483	34073	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus gene for 16S ribosomal RNA	D30793	1457	34073	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus DNA for 16S ribosomal RNA	D88006	1467	34073	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus gyrB gene for DNA gyrase subunit B, partial cds, clone: gy10337.icb	AB014966	1491	34073	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus msald gene for methylserine aldolase, complete cds, strain: NBRC 15149	AB426474	1985	1321610	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Variovorax paradoxus gene for 16S rRNA, partial sequence, strain: NBRC 15149	AB680784	1460	1321610	*

Availability in culture collectionsStrain availability

[Ref.: #9096]

Culture collection no.

DSM 30034, ATCC 17713, DSM 66, IFO 15149, NBRC 15149

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Strain history

<- ATCC <- R.Y. Stanier, 351 <- D.H. Davis, B13-0-1 D

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Associated Passport(s) in StrainInfo

22223, 22220, 22224, 164298, 487630

References

#9096

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30034

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36606 ; Curators of the CIP;
* These References are textmined

Search for species Variovorax paradoxus in external resources:
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