Roseiflexus castenholzii HLO8 | Type strain | DSM 13941

Strain identifier

BacDive ID: 2416

Type strain:

Species: Roseiflexus castenholzii

Strain Designation: HLO8

Culture col. no.: DSM 13941

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #5192]	Domain	Bacteria
[Ref.: #5192]	Phylum	Chloroflexi
[Ref.: #5192]	Class	Chloroflexia
[Ref.: #5192]	Order	Chloroflexales, not validated
[Ref.: #5192]	Family	Roseiflexaceae
[Ref.: #5192]	Genus	Roseiflexus
[Ref.: #5192]	Species	Roseiflexus castenholzii
[Ref.: #5192]	Full Scientific Name	Roseiflexus castenholzii Hanada et al. 2002
[Ref.: #5192]	Strain Designation	HLO8
[Ref.: #5192]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Chloroflexi
[Ref.: #20215]	Class	Chloroflexia		Int. J. Syst. Evol. Microbiol. 63:1577
[Ref.: #20215]	Family	Roseiflexaceae		Int. J. Syst. Evol. Microbiol. 63:1578
[Ref.: #20215]	Genus	Roseiflexus	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 52:192*
[Ref.: #20215]	Species	Roseiflexus castenholzii	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 52:192*
[Ref.: #20215]	Full Scientific Name	Roseiflexus castenholzii Hanada et al. 2002

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23075]	Gram stain	negative
[Ref.: #23075]	Cell width	0.8-1.0 µm
[Ref.: #23075]	Cell shape	filament-shaped
[Ref.: #23075]	Motility	yes

[Ref.: #23075]	Colony color	red to reddish-brown
[Ref.: #23075]	Cultivation medium used	1.5% agar-containing PE plate

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23075]		Yeast extract	+	carbon source
[Ref.: #23075]		Yeast extract (0.01 %, w/v)	+	growth

[Ref.: #23075]	Nutrition type	photoheterotroph
[Ref.: #23075]	Nutrition type	chemoheterotroph

[Ref.: #5192]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #5192]

Culture medium

CHLOROFLEXUS AGGREGANS MEDIUM (DSMZ Medium 87a), 48°C, + 0.3% yeast extract + 0.3% Na-pyruvate, anaerobic in light

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

[Ref.: #23075]

Culture medium

1.5% agar-containing PE plate

[Ref.: #23075]

Culture medium growth

		Temperature
[Ref.: #5192]	growth	48-50 ̊C
[Ref.: #23075]	growth	45.0-55.0 ̊C
[Ref.: #23075]	optimum	50.0 ̊C

[Ref.: #5192]	Temperature range	thermophilic
[Ref.: #23075]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #23075]			optimum	7.5-8.0
[Ref.: #23075]			growth	7.0-9.0

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #5192]

Sample type/isolated from

a bacterial mat in Nakabusa hot spring (40-60°C, pH 7.8-8.2)

[Ref.: #5192]

Geographic location (country and/or sea, region)

Nagano Pref.

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Country

Japan

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Continent

Asia

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Enrichment culture

PE medium

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Enrichment culture temperature

50.0 ̊C

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Microbial community	#Microbial mats
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #5192]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #5192]	GC-content	62.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23075]	GC-content	62.0 mol%	high performance liquid chromatography (HPLC)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	INSDC Sequence	Sequence 10169 from Patent WO2010046221	HC753078	1311	383372	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Roseiflexus castenholzii DSM 13941 transfer-messenger mRNA Rosei_caste_13941, single chain mature transcript	HG782634	368	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ala-CGC-1-1 gene	LK015029	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ala-GGC-1-1 gene	LK015030	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ala-TGC-1-1 gene	LK015031	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Arg-CCG-1-1 gene	LK015032	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Arg-GCG-1-1 gene	LK015034	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Arg-TCG-1-1 gene	LK015035	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Arg-TCT-1-1 gene	LK015036	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Asn-GTT-1-1 gene	LK015037	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Asp-GTC-1-1 gene	LK015038	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Cys-GCA-1-1 gene	LK015039	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Gln-CTG-1-1 gene	LK015040	74	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Gln-TTG-1-1 gene	LK015041	74	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Glu-CTC-1-1 gene	LK015042	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Glu-TTC-1-1 gene	LK015043	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Glu-TTC-2-1 gene	LK015044	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Gly-GCC-1-1 gene	LK015046	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Gly-TCC-1-1 gene	LK015047	74	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-His-GTG-1-1 gene	LK015048	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ile-GAT-1-1 gene	LK015049	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Leu-CAA-1-1 gene	LK015050	86	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Leu-CAG-1-1 gene	LK015051	87	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Leu-GAG-1-1 gene	LK015052	89	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Leu-TAA-1-1 gene	LK015053	86	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Leu-TAG-1-1 gene	LK015054	85	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Lys-CTT-1-1 gene	LK015055	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Lys-TTT-1-1 gene	LK015056	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Met-CAT-1-1 gene	LK015057	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Met-CAT-2-1 gene	LK015058	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Met-CAT-2-2 gene	LK015059	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Met-CAT-3-1 gene	LK015060	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Phe-GAA-1-1 gene	LK015061	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Pro-CGG-1-1 gene	LK015062	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Pro-GGG-1-1 gene	LK015063	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Pro-TGG-1-1 gene	LK015064	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ser-CGA-1-1 gene	LK015065	90	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ser-GCT-1-1 gene	LK015066	91	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ser-GGA-1-1 gene	LK015067	91	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Ser-TGA-1-1 gene	LK015068	92	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Thr-CGT-1-1 gene	LK015069	75	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Thr-GGT-1-1 gene	LK015070	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Thr-TGT-1-1 gene	LK015071	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Trp-CCA-1-1 gene	LK015072	76	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Tyr-GTA-1-1 gene	LK015073	87	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Val-CAC-1-1 gene	LK015074	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Val-GAC-1-1 gene	LK015075	77	383372	*
[Ref.: #20218]	INSDC Sequence	TPA: Roseiflexus castenholzii DSM 13941 tRNA-Val-TAC-1-1 gene	LK015076	76	383372	*
[Ref.: #5192]	DDBJ EMBL Direct submission		AB041226

Availability in culture collectionsStrain availability

[Ref.: #5192]

Culture collection no.

DSM 13941

[Ref.: #5192]

Strain history

<- S. Hanada; HLO8

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Associated Passport(s) in StrainInfo

163877

References

#5192

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13941

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23075

Satoshi Hanada,Shinichi Takaichi,Katsumi Matsuura,Kazunori Nakamura: Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes.. IJSEM 52: 187 - 193 2002 ( DOI 10.1099/00207713-52-1-187 )

* These References are textmined

Search for species Roseiflexus castenholzii in external resources:
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