Bradyrhizobium elkanii USDA 76 | Type strain | DSM 11554, ATCC 49852

Strain identifier

BacDive ID: 1811

Type strain:

Species: Bradyrhizobium elkanii

Strain Designation: USDA 76

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4416]	Domain	Bacteria
[Ref.: #4416]	Phylum	Proteobacteria
[Ref.: #4416]	Class	Alphaproteobacteria
[Ref.: #4416]	Order	Rhizobiales
[Ref.: #4416]	Family	Bradyrhizobiaceae
[Ref.: #4416]	Genus	Bradyrhizobium
[Ref.: #4416]	Species	Bradyrhizobium elkanii
[Ref.: #4416]	Full Scientific Name	Bradyrhizobium elkanii Kuykendall et al. 1993
[Ref.: #4416]	Strain Designation	USDA 76
[Ref.: #4416]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Bradyrhizobiaceae
[Ref.: #20215]	Genus	Bradyrhizobium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 32:137*
[Ref.: #20215]	Species	Bradyrhizobium elkanii	sp. nov. (VL)	Int. J. Syst. Bacteriol. 43:398
[Ref.: #20215]	Full Scientific Name	Bradyrhizobium elkanii Kuykendall et al. 1993

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4416]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98), 30°C

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Culture medium growth

[Ref.: #4416]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #4416]			growth	30 ̊C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4416]

Sample type/isolated from

soybean Glycine max

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Country

USA

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Continent

North America

Isolation sources categories

#Host-associates	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4416]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence	AF362942	1042	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain ICMP 13638 AtpD (atpD) gene, partial cds	AY493446	455	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii ICMP 13638 glutamine synthetase II (glnII) gene, partial cds	AY494804	828	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nifH gene for dinitrogen reductase, partial cds	AB094963	783	398525	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodC gene for N-acetylglucosaminyltransferase, partial cds, strain: IFO 14791T	AB354631	747	398525	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain LMG 6134 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345254	854	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii nitrogenase iron protein (nifH) gene, partial cds	AF484640	446	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii internal transcribed spacer 1, strain LMG 6134	AJ279308	809	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial recA gene for recombinase A	AM168342	559	398525	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial dnaK gene for Hsp70 molecular chaperone	AM168363	707	398525	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial noeE gene for sulfate transferase	AM168374	629	398525	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial nodZ gene for fucosyltransferase	AM168395	467	398525	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial noeI gene for 2-O-methyltransferase	AM168415	353	398525	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gltA gene for citrate synthase, strain LMG 6134	AM181653	642	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial thrC gene for threonine synthase, strain LMG 6134	AM181727	636	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial recA gene for recombinase A, strain LMG 6134	AM182155	499	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial glnA gene for glutamine synthase, strain LMG 6134	AM182976	977	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial rpoB gene for RNA polymerase beta subunit, strain LMG 6134	AM295348	954	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gap gene for glyceraldehyde 3-phosphate dehydrogenase, strain LMG 6134	AM295405	798	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial pnp gene for polyribonucleotide nucleotidyltransferase, strain LMG 6134	AM295489	540	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial 23S rRNA gene, strain LMG 6134	AM418712	1897	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial atpD gene for ATP synthase beta subunit, strain LMG 6134	AM418752	486	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gyrB gene for DNA gyrase subunit beta, strain LMG 6134	AM418800	666	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial pal gene for peptidoglycan-associated lipoprotein, type strain LMG 6134T	FM213187	261	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial ribonuclease P RNA (rnpB gene), type strain LMG 6134T	FM213236	314	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii gene for 16S ribosomal RNA, partial sequence, strain: NBRC 14791	AB509378	1414	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii genes for 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile, tRNA-Ala, partial and complete sequence, strain: NBRC 14791	AB509379	833	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii gyrB gene for DNA gyrase subunit B, partial cds, strain:USDA76T	AB070584	909	398525	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodD gene for nodulation regulator protein, partial cds, strain: USDA 76	AB073139	867	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodY pseudogene for nodulation regulator protein, strain: USDA 76	AB073145	452	29448	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii DNA, 16S-23S ITS1 region, tRNA-Ile, tRNA-Ala, strain: USDA 76	AB100747	809	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 23S ribosomal RNA gene, partial sequence	AF321224	468	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 dinitrogenase alpha subunit (nifD) gene, partial cds	AF484266	815	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial nodZ gene for fucosyltransferase, strain USDA76	AJ431123	459	186896	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial dnaK gene for molecular chaperone, strain USDA 76	AJ431152	278	29448	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii nodA gene and partial nodB gene, strain USDA76	AM117554	1315	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C1, whole genome shotgun sequence	ARAG01000001	2126	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C2, whole genome shotgun sequence	ARAG01000002	1371268	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C3, whole genome shotgun sequence	ARAG01000003	1629	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C4, whole genome shotgun sequence	ARAG01000004	271804	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C5, whole genome shotgun sequence	ARAG01000005	1852064	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C6, whole genome shotgun sequence	ARAG01000006	92065	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C7, whole genome shotgun sequence	ARAG01000007	59317	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C8, whole genome shotgun sequence	ARAG01000008	1154065	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C9, whole genome shotgun sequence	ARAG01000009	2493299	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C10, whole genome shotgun sequence	ARAG01000010	2425	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C11, whole genome shotgun sequence	ARAG01000011	1804836	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C12, whole genome shotgun sequence	ARAG01000012	10507	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C1, whole genome shotgun sequence	ARAG01000013	2509	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C2, whole genome shotgun sequence	ARAG01000014	3213	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C3, whole genome shotgun sequence	ARAG01000015	21366	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C4, whole genome shotgun sequence	ARAG01000016	27028	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C5, whole genome shotgun sequence	ARAG01000017	1395	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C6, whole genome shotgun sequence	ARAG01000018	26858	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C7, whole genome shotgun sequence	ARAG01000019	46320	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C8, whole genome shotgun sequence	ARAG01000020	94186	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C9, whole genome shotgun sequence	ARAG01000021	7767	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C10, whole genome shotgun sequence	ARAG01000022	38225	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C11, whole genome shotgun sequence	ARAG01000023	2500	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C12, whole genome shotgun sequence	ARAG01000024	66565	398525	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C13, whole genome shotgun sequence	ARAG01000025	29130	398525	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 DnaK (dnaK) gene, partial cds	AY328392	603	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 ATP synthase beta subunit (atpD) gene, partial cds	AY386758	483	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA76 recombination protein A (recA) gene, partial cds	AY591568	511	398525	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 glutamine synthetase isoform II (glnII) gene, partial cds	AY599117	594	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 RNA polymerase beta subunit (rpoB) gene, partial cds	EF190188	771	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 N-acetylglucosaminyltransferase (nodC) gene, partial cds	HQ233221	539	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 16S ribosomal RNA gene, partial sequence	HQ233240	1340	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 DNA topoisomerase IV subunit B (gyrB) gene, partial cds	JN685726	438	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 GTP-binding membrane protein (lepA) gene, partial cds	JN685774	434	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 aspartate semialdehyde dehydrogenase (asd) gene, partial cds	JN685822	434	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	JN685874	446	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 acetolactate synthase (ilvI) gene, partial cds	JN685929	375	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 malate dehydrogenase (mdh) gene, partial cds	JN685981	451	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) gene, partial cds	JN686031	394	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 50S ribosomal protein L3 (rplC) gene, partial cds	JN993851	432	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii N-acetylglucosaminyltransferase (nodC) gene, partial cds	JN993940	644	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 nodulation protein D1 (nodD1) gene, partial cds; NodK (nodK) gene, complete cds; and acyl transferase (nodA) gene, partial cds	JQ911633	1276	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii hypothetical protein (SMc00019) gene, partial cds	JX064205	309	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii TruA (truA) gene, partial cds	JX064277	492	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii ThrA (thrA) gene, partial cds	JX064349	491	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii nodulation protein acetyl transferase (nolL) gene, partial cds	KC527009	637	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 dinitrogenase alpha subunit (nifD) gene, partial cds	KF532341	822	29448	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 recombination protein A (recA) gene, partial cds	KF532941	513	29448	*
[Ref.: #20218]	INSDC Sequence	Bradyrhizobium japonicum (USDA 76) 16S ribosomal RNA (partial)	M55490	264	375	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, complete sequence	U35000	5136	29448	*

Availability in culture collectionsStrain availability

[Ref.: #4416]

Culture collection no.

DSM 11554, ATCC 49852

[Ref.: #4416]

Strain history

<- ATCC <- L. D. Kuykendall, USDA 76

[Ref.: #20218]

Associated Passport(s) in StrainInfo

162736, 5815

References

#4416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11554

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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