Bradyrhizobium denitrificans 222 | Type strain | DSM 1113, ATCC 43295, HAMBI 2266, IFAM 1005 (historical number), LMG 8443, VKM B-2062

Strain identifier

BacDive ID: 1810

Type strain:

Species: Bradyrhizobium denitrificans

Strain Designation: 222

Culture col. no.: DSM 1113, ATCC 43295, HAMBI 2266, IFAM 1005 (historical number), LMG 8443, VKM B-2062

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #562]	Domain	Bacteria
[Ref.: #562]	Phylum	Proteobacteria
[Ref.: #562]	Class	Alphaproteobacteria
[Ref.: #562]	Order	Rhizobiales
[Ref.: #562]	Family	Bradyrhizobiaceae
[Ref.: #562]	Genus	Bradyrhizobium
[Ref.: #562]	Species	Bradyrhizobium denitrificans
[Ref.: #562]	Full Scientific Name	Bradyrhizobium denitrificans (Hirsch and Müller 1986) van Berkum et al. 2011
[Ref.: #562]	Strain Designation	222
[Ref.: #562]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Bradyrhizobiaceae
[Ref.: #20215]	Genus	Bradyrhizobium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 32:137*
[Ref.: #20215]	Species	Bradyrhizobium denitrificans	comb. nov. (VL)	Int. J. Syst. Evol. Microbiol. 61:1011
[Ref.: #20215]	Full Scientific Name	Bradyrhizobium denitrificans (Hirsch and Müller 1986) van Berkum et al. 2011

[Ref.: #20215]

Synonym

Blastobacter denitrificans

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #562]

Culture medium

PYGV AGAR (DSMZ Medium 621), 40°C

[Ref.: #562]

Culture medium growth

[Ref.: #562]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #562]			growth	40 ̊C

[Ref.: #562]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #562]

Sample type/isolated from

surface lake water

[Ref.: #562]

Geographic location (country and/or sea, region)

Schleswig-Holstein, Plubsea

[Ref.: #562]

Country

Germany

[Ref.: #562]

Continent

Europe

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #562]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #562]

GC-content

64.5±0.8 mol%

thermal denaturation, midpoint method (Tm)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans internal transcribed spacer 1, strain LMG 8443	AJ279318	1047	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial norB gene for nitric oxide reductase	AJ507352	419	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Blastobacter denitrificans strain LMG 8443 PufM (pufM) gene, partial cds	DQ017854	196	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans recombination protein A (recA) gene, partial cds	EU665419	547	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans DnaK (dnaK) gene, partial cds	FJ347273	635	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans GlnB (glnB) gene, partial cds	FJ347346	599	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial atpD gene for ATP synthase F1, type strain LMG 8443T	FM253153	504	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial recA gene for recombinase A, type strain LMG 8443T	FM253196	442	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial gyrB gene for DNA gyrase, B subunit, type strain LMG 8443T	FM253239	669	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial rpoB gene for RNA polymerase, beta subunit, type strain LMG 8443T	FM253282	1440	328552	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Blastobacter denitrificans partial dnaK gene for heat shock protein Hsp70, type strain LMG 8443T	FM253325	280	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans strain LMG 8443 glutamine synthetase isoform II (glnII) gene, partial cds	HM047121	614	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans strain LMG 8443 nitrogenase reductase (nifH) gene, partial cds	HM047125	732	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans hypothetical protein gene, partial cds	KC509372	309	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans RNA pseudouridine synthase A (truA) gene, partial cds	KC509430	492	328552	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium denitrificans strain LMG 8443 Hsp70 class chaperone (dnaK) gene, partial cds	KF962685	369	328552	*
[Ref.: #20218]	INSDC Sequence	16S rRNA [Blastobacter denitrificans, LMG 8443, rRNA partial, 1443 nt]	S46917	1443	328552	*
[Ref.: #562]	EMBL Direct submission	Blastobacter denitrificans partial 16S rRNA gene, strain LMG 8443	X66025	1443	328552
[Ref.: #562]	GenBank Direct submission		AF338176

Availability in culture collectionsStrain availability

[Ref.: #562]

Culture collection no.

DSM 1113, ATCC 43295, HAMBI 2266, IFAM 1005 (historical number), LMG 8443, VKM B-2062

[Ref.: #562]

Strain history

<- P. Hirsch (IFAM) <- M. Müller, 222

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5536, 5535, 536764, 5534, 226655

References

#562	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1113

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

Search for species Bradyrhizobium denitrificans in external resources:
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