Xanthomonas sacchari | Type strain | DSM 22617, CFBP 4641, ICMP 16916, LMG 471

Strain identifier

BacDive ID: 17610

Type strain:

Species: Xanthomonas sacchari

Culture col. no.: DSM 22617, CFBP 4641, ICMP 16916, LMG 471

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #16366]	Domain	Bacteria
[Ref.: #16366]	Phylum	Proteobacteria
[Ref.: #16366]	Class	Gammaproteobacteria
[Ref.: #16366]	Order	Xanthomonadales
[Ref.: #16366]	Family	Lysobacteraceae
[Ref.: #16366]	Genus	Xanthomonas
[Ref.: #16366]	Species	Xanthomonas sacchari
[Ref.: #16366]	Full Scientific Name	Xanthomonas sacchari Vauterin et al. 1995
[Ref.: #16366]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2236
[Ref.: #20215]	Family	Lysobacteraceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Xanthomonas	genus (AL)	Int. J. Syst. Bacteriol. 30:418 (AL)
[Ref.: #20215]	Species	Xanthomonas sacchari	sp. nov. (VP)	Int. J. Syst. Bacteriol. 45:486*
[Ref.: #20215]	Full Scientific Name	Xanthomonas sacchari Vauterin et al. 1995

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #16366]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 28°C

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Culture medium growth

[Ref.: #16366]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16366]			growth	28 ̊C

[Ref.: #16366]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #16366]

Sample type/isolated from

diseased sugarcane Saccharum officinarum

[Ref.: #16366]

Country

Guadeloupe

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Continent

Middle and South America

Isolation sources categories

#Host-associates

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #16366]	Pathogenicity (plant)	yes
[Ref.: #16366]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #16366]

GC-content

68.5 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #16366]	EMBL Direct submission	X.sacchari 16S rRNA gene	Y10766	1500	56458
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG471 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF209762	492	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain ICMP 16916 gyrase subunit B (gyrB) gene, partial cds	EU499063	864	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain ICMP 16916 RNA polymerase sigma factor (rpoD) gene, partial cds	EU499183	858	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari culture-collection LMG:471 F1-F0-ATPase subunit (atpD) gene, partial cds	HM568949	768	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari culture-collection LMG:471 70 kDa heat shock protein (dnaK) gene, partial cds	HM569033	765	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari culture-collection LMG:471 elongation factor P (efp) gene, partial cds	HM569116	387	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari culture-collection LMG:471 DNA gyrase subunit B (gyrB) gene, partial cds	HM569200	776	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 F1-F0-ATPase subunit (atpD) gene, partial cds	KF306102	768	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 class I heat-shock protein (dnaK) gene, partial cds	KF306116	903	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 elongation factor P (efp) gene, partial cds	KF306130	389	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 glutamine synthetase A (glnA) gene, partial cds	KF306144	887	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 DNA gyrase B (gyrB) gene, partial cds	KF306158	530	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 GTP binding protein (lepA) gene, partial cds	KF306172	390	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 RNA polymerase sigma factor (rpoD) gene, partial cds	KF306186	858	56458	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xanthomonas sacchari strain LMG 471 TonB-dependent receptor (fyuA) gene, partial cds	KF306200	698	56458	*

Availability in culture collectionsStrain availability

[Ref.: #16366]

Culture collection no.

DSM 22617, CFBP 4641, ICMP 16916, LMG 471

[Ref.: #16366]

Strain history

<- LMG <- F. Leoville, INRA Guadeloupe <- M. Beramis

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Associated Passport(s) in StrainInfo

622192, 721643, 22902

References

#16366

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22617

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

Search for species Xanthomonas sacchari in external resources:
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