Vibrio tapetis subsp. tapetis B1090 | Type strain | DSM 21475, ATCC 700075 (historical number), CECT 4600, CIP 104856, LMG 19706

Strain identifier

BacDive ID: 17332

Type strain:

Species: Vibrio tapetis subsp. tapetis

Strain Designation: B1090

Culture col. no.: DSM 21475, ATCC 700075 (historical number), CECT 4600, CIP 104856, LMG 19706

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #15727]	Domain	Bacteria
[Ref.: #15727]	Phylum	Proteobacteria
[Ref.: #15727]	Class	Gammaproteobacteria
[Ref.: #15727]	Order	Vibrionales, not validated
[Ref.: #15727]	Family	Vibrionaceae
[Ref.: #15727]	Genus	Vibrio
[Ref.: #15727]	Species	Vibrio tapetis subsp. tapetis
[Ref.: #15727]	Full Scientific Name	Vibrio tapetis subsp. tapetis (Borrego et al. 1996) Balboa and Romalde 2013
[Ref.: #15727]	Strain Designation	B1090
[Ref.: #15727]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2236
[Ref.: #20215]	Family	Vibrionaceae		Int. J. Syst. Bacteriol. 30:238
[Ref.: #20215]	Genus	Vibrio	genus (AL)	Int. J. Syst. Bacteriol. 30:417 (AL)
[Ref.: #20215]	Species	Vibrio tapetis subsp. tapetis	subsp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 63:2366
[Ref.: #20215]	Full Scientific Name	Vibrio tapetis subsp. tapetis (Borrego et al. 1996) Balboa and Romalde 2013 emend. Levican et al. 2017

[Ref.: #20215]

Synonym

Vibrio tapetis

Information on morphological and physiological propertiesMorphology and physiology

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #15727]	4006	+	-	-	-	-	-	+	+	+	-	+	-	-	+	-	-	-	+	+	-	+

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #15727]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514), 28°C, with 1 g/l yeast extract

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

[Ref.: #42262]

Culture medium

MEDIUM 13 - Marine agar

[Ref.: #42262]

Culture medium growth

[Ref.: #42262]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15727]			growth	28 ̊C
[Ref.: #42262]			growth	25 ̊C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #15727]

Sample type/isolated from

Tapes philippinarum, clam

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Geographic location (country and/or sea, region)

Landéda

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Country

France

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Continent

Europe

Isolation sources categories

#Host-associates

#Invertebrates

#Mollusca

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #15727]	Pathogenicity (animal)	yes
[Ref.: #15727]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #15727]	EMBL Direct submission	V.tapetis 16S rRNA gene	Y08430	1472	52443
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial hsp60 gene for heat shock protein 60, strain CECT 4600	AM162561	548	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial gyrB gene for gyrase B protein, strain CECT 4600	AM162571	1187	52443	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio tapetis strain CECT4600 DNA gyrase subunit B gene, partial cds	AY795838	949	52443	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio tapetis strain CECT 4600 RNA polymerase beta subunit (rpoB) gene, partial cds	AY823540	335	52443	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio tapetis strain CECT4600 DnaJ-like protein (djlA) and conserved hypothetical protein (duf924) genes, complete cds	EU303302	1826	52443	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio tapetis strain CECT4600 plasmid pVT1, complete sequence	EU573358	82266	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis 16S rRNA gene, type strain CECT 4600T	HE795129	1531	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis atpA gene for ATPase subunit alpha, type strain CECT 4600T	HE795159	1212	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial pyrH gene for uridylate kinase, type strain CECT 4600T	HE795189	549	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial recA gene for recombinase A, type strain CECT 4600T	HE795219	813	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial topA gene for DNA topoisomerase I, type strain CECT 4600T	HE795249	669	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial rpoD gene for RNA polymerase sigma factor, type strain CECT 4600T	HE795279	790	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial fstZ gene for cell division protein, type strain CECT 4600T	HE795317	630	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial rpoA gene for RNA polymerase alpha subunit, type strain CECT 4600T	HE795340	894	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial gapA gene for glyceraldehyde-3-phosphodehydrogenase, type strain CECT 4600T	HE795369	726	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio tapetis partial rpoD gene for sigma factor RNA polymerase, strain CECT 4600	HF542104	870	52443	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio sp. CECT 4600 partial pyrH gene for uridylate kinase, strain CECT 4600	HF545989	612	1258547	*

Availability in culture collectionsStrain availability

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Culture collection no.

DSM 21475, ATCC 700075 (historical number), CECT 4600, CIP 104856, LMG 19706

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Strain history

<- CIP <- CECT <- J. J. Borrego, Faculty of Sciences, University of Malaga, Spain; B1090 <- C. Paillard and P. Maes, Faculty of Pharmacy, University of Sevilla, Spain

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Associated Passport(s) in StrainInfo

900381, 48922, 48923, 48924

References

#15727

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21475

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42262 ; Curators of the CIP;
* These References are textmined

Search for species Vibrio tapetis subsp. tapetis in external resources:
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