Photobacterium phosphoreum | Type strain | DSM 15556, ATCC 11040, NCIMB 1282

Strain identifier

BacDive ID: 17221

Type strain:

Species: Photobacterium phosphoreum

Culture col. no.: DSM 15556, ATCC 11040, NCIMB 1282

Section

Name and taxonomic classification
Culture and growth conditions
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #5999]	Domain	Bacteria
[Ref.: #5999]	Phylum	Proteobacteria
[Ref.: #5999]	Class	Gammaproteobacteria
[Ref.: #5999]	Order	Vibrionales, not validated
[Ref.: #5999]	Family	Vibrionaceae
[Ref.: #5999]	Genus	Photobacterium
[Ref.: #5999]	Species	Photobacterium phosphoreum
[Ref.: #5999]	Full Scientific Name	Photobacterium phosphoreum (Cohn 1878) Beijerinck 1889
[Ref.: #5999]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2236
[Ref.: #20215]	Family	Vibrionaceae		Int. J. Syst. Bacteriol. 30:238
[Ref.: #20215]	Genus	Photobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:344 (AL)
[Ref.: #20215]	Species	Photobacterium phosphoreum	species (AL)	Int. J. Syst. Bacteriol. 30:344 (AL)
[Ref.: #20215]	Full Scientific Name	Photobacterium phosphoreum (Cohn 1878) Beijerinck 1889

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #5999]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 246 (DSMZ Medium 246a), 25°C

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Culture medium growth

[Ref.: #5999]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #5999]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

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Culture medium growth

[Ref.: #5999]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41661]

Culture medium

MEDIUM 13 - Marine agar

[Ref.: #41661]

Culture medium growth

[Ref.: #41661]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5999]			growth	25 ̊C
[Ref.: #41661]			growth	25 ̊C

[Ref.: #5999]

Temperature range

mesophilic

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #5999]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum gyrase B (gyrB) gene, partial cds	AF136386	1259	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum phosphatidylserine synthase (pss) gene, partial cds	AF168382	839	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 16S ribosomal RNA gene, partial sequence	AY341437	1467	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 DNA gyrase subunit B (gyrB) gene, partial cds	AY455875	1217	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum beta-lactamase (ampC) gene, complete cds	AY787792	2101	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum 16S rRNA	D11186	212	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum 16S rRNA	D11235	214	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum 16S rRNA	D11284	191	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum gene for 16S rRNA	D25310	1465	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 acyl-CoA reductase (luxC), myristoyl transferase (luxD), alpha subunit luciferase (luxA), beta subunit luciferase (luxB), LuxF (luxF), acyl-protein synthetase (luxE), LuxG (luxG), RibB (ribB), and RibH (ribH) genes, complete cds; and RibA (ribA) gene, partial cds	DQ988873	10364	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 uridylate kinase (pyrH) gene, partial cds	EF380239	604	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds	EF415496	708	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 recombinase A (recA) gene, partial cds	EF415550	834	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 DNA-directed RNA polymerase alpha subunit (rpoA) gene, partial cds	EF415585	928	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 RNA polymerase sigma factor (rpoD) gene, partial cds	EF415602	856	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain ATCC 11040 AtpA (atpA) gene, partial cds	HQ333489	875	659	*
[Ref.: #20218]	INSDC Sequence	P.phosphoreum Arg-tRNA and His-tRNA genes	M29761	2566	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum DNA for tRNA-Pro and tRNA-His	X12975	2311	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum DNA for tRNA-Pro and tRNA-His	X12976	2654	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum (ATCC 11040T) gene for 16S ribosomal RNA	X74687	1457	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain CIP102511 16S-23S ribosomal RNA intergenic spacer, complete sequence	AY779756	320	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain CIP102511 16S-23S ribosomal RNA intergenic spacer, complete sequence	AY779757	351	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain CIP102511 16S-23S ribosomal RNA intergenic spacer, complete sequence	AY779758	391	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain CIP102511 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence	AY779759	610	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum sodB gene for iron-cofactored superoxide dismutase, partial cds, strain:IAM14401	AB050789	424	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum DNA, 16S-23S rRNA intergenic spacer and 23S rRNA, partial sequence, strain: IAM 14401	AB255705	290	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum gyrB gene for gyrase B subunit, partial cds	AB298195	848	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain IAM14401 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds	DQ907265	842	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain IAM14401 FtsZ (ftsZ) gene, partial cds	DQ907326	677	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain IAM14401 rod shaping protein MreB (mreB) gene, partial cds	DQ907393	914	659	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Photobacterium phosphoreum strain IAM14401 topoisomerase I (topA) gene, partial cds	DQ907465	640	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum partial mRNA for recombination-repair protein (recA gene), type strain LMG 4233T	AJ580846	768	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum partial recA gene, strain LMG 4233T	AJ842365	768	659	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Photobacterium phosphoreum partial rpoA gene for RNA polymerase alpha-subunit, strain LMG 4233T	AJ842551	928	659	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Photobacterium phosphoreum gene for 16S rRNA, partial sequence, strain: NBRC 103031	AB681911	1470	659	*

Availability in culture collectionsStrain availability

[Ref.: #5999]

Culture collection no.

DSM 15556, ATCC 11040, NCIMB 1282

[Ref.: #5999]

Strain history

<- NCIMB <- ATCC <- F. H. Johnson <- A. J. Kluyver

[Ref.: #20218]

Associated Passport(s) in StrainInfo

371353, 16277, 205633

References

#5999

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15556

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41661 ; Curators of the CIP;
* These References are textmined

Search for species Photobacterium phosphoreum in external resources:
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