Gordonia namibiensis NAM-BN063A | Type strain | DSM 44568, NCIMB 13800

Strain identifier

BacDive ID: 10604

Type strain:

Species: Gordonia namibiensis

Strain Designation: NAM-BN063A

Culture col. no.: DSM 44568, NCIMB 13800

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #11764]	Domain	Bacteria
[Ref.: #11764]	Phylum	Actinobacteria
[Ref.: #11764]	Class	Actinobacteria
[Ref.: #11764]	Order	Actinomycetales
[Ref.: #11764]	Family	Nocardiaceae
[Ref.: #11764]	Genus	Gordonia
[Ref.: #11764]	Species	Gordonia namibiensis
[Ref.: #11764]	Full Scientific Name	Gordonia namibiensis Brandao et al. 2002
[Ref.: #11764]	Strain Designation	NAM-BN063A
[Ref.: #11764]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Nocardiaceae
[Ref.: #20215]	Genus	Gordonia	gen. nov. (VL) nom. rev.	Int. J. Syst. Bacteriol. 39:371
[Ref.: #20215]	Species	Gordonia namibiensis	sp. nov. (VL)	Int. J. Syst. Evol. Microbiol. 52:685
[Ref.: #20215]	Full Scientific Name	Gordonia namibiensis Brandao et al. 2002

Information on morphological and physiological propertiesMorphology and physiology

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #11764]	704	-	-	+/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #11764]	1271	-	+/-	-	+/-	-	+	-	-	-	-	+/-	-	-	-	-	+	-	-	-	-

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #11764]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #11764]

Culture medium growth

[Ref.: #11764]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #33147]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33147]

Culture medium growth

[Ref.: #33147]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11764]			growth	28 ̊C
[Ref.: #33147]			growth	30 ̊C

[Ref.: #11764]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #11764]

Sample type/isolated from

soil

[Ref.: #11764]

Geographic location (country and/or sea, region)

Kalahari

[Ref.: #11764]

Country

Namibia

[Ref.: #11764]

Continent

Africa

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #11764]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #11764]	GenBank Direct submission		AF380930
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Gordonia namibiensis secA1 gene for preprotein translocase SecA1, partial cds, strain: DSM 44568	AB437916	496	1208314	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Gordonia namibiensis gyrB gene for DNA gyrase subunit B, partial cds, strain: DSM 44568	AB438189	1233	1208314	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Gordonia namibiensis strain DSM 44568 catechol 1,2-dioxygenase (catA) gene, partial cds	EU871797	379	1208314	*

Availability in culture collectionsStrain availability

[Ref.: #11764]

Culture collection no.

DSM 44568, NCIMB 13800

[Ref.: #11764]

Strain history

<- M. Goodfellow, Univ. Newcastle; NAM-BN063A

[Ref.: #20218]

Associated Passport(s) in StrainInfo

302575, 211760

References

#11764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44568

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33147 ; Curators of the CIP;
* These References are textmined

Search for species Gordonia namibiensis in external resources:
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