Mycobacterium colombiense 10B | Type strain | DSM 45105, CECT 3035, CIP 108962

Strain identifier

BacDive ID: 8550

Type strain:

Species: Mycobacterium colombiense

Strain Designation: 10B

Culture col. no.: DSM 45105, CECT 3035, CIP 108962

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #12347]	Domain	Bacteria
[Ref.: #12347]	Phylum	Actinobacteria
[Ref.: #12347]	Class	Actinobacteria
[Ref.: #12347]	Order	Actinomycetales
[Ref.: #12347]	Family	Mycobacteriaceae
[Ref.: #12347]	Genus	Mycobacterium
[Ref.: #12347]	Species	Mycobacterium colombiense
[Ref.: #12347]	Full Scientific Name	Mycobacterium colombiense Murcia et al. 2006
[Ref.: #12347]	Strain Designation	10B
[Ref.: #12347]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Mycobacteriaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Mycobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:324 (AL)
[Ref.: #20215]	Species	Mycobacterium colombiense	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 56:2053*
[Ref.: #20215]	Full Scientific Name	Mycobacterium colombiense Murcia et al. 2006

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #12347]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645), 37°C

[Ref.: #12347]

Culture medium growth

[Ref.: #12347]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #42061]

Culture medium

MEDIUM 55 - for Mycobacterium

[Ref.: #42061]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #12347]			growth	37 ̊C
[Ref.: #42061]			growth	37 ̊C

[Ref.: #12347]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #12347]

Sample type/isolated from

blood of an HIV positive patient

[Ref.: #12347]

Geographic location (country and/or sea, region)

Colombia

[Ref.: #12347]

Country

South America

[Ref.: #12347]

Continent

Middle and South America

Isolation sources categories

#Medical	#Patient	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #12347]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #12347]	EMBL Direct submission	Mycobacterium colombiense partial 16S rRNA gene and ITS1, type strain:10B	AM062764	1807	1041522
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00001, whole genome shotgun sequence	AFVW01000001	977160	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00002, whole genome shotgun sequence	AFVW01000002	745349	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00003, whole genome shotgun sequence	AFVW01000003	742630	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00004, whole genome shotgun sequence	AFVW01000004	435919	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00005, whole genome shotgun sequence	AFVW01000005	360270	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00006, whole genome shotgun sequence	AFVW01000006	356162	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00007, whole genome shotgun sequence	AFVW01000007	332944	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00008, whole genome shotgun sequence	AFVW01000008	313122	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00009, whole genome shotgun sequence	AFVW01000009	238272	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00010, whole genome shotgun sequence	AFVW01000010	193006	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00011, whole genome shotgun sequence	AFVW01000011	173569	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00012, whole genome shotgun sequence	AFVW01000012	133080	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00013, whole genome shotgun sequence	AFVW01000013	128679	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00014, whole genome shotgun sequence	AFVW01000014	123963	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00015, whole genome shotgun sequence	AFVW01000015	118529	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00016, whole genome shotgun sequence	AFVW01000016	101940	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00017, whole genome shotgun sequence	AFVW01000017	85747	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00018, whole genome shotgun sequence	AFVW01000018	5490	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00019, whole genome shotgun sequence	AFVW01000019	4069	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00020, whole genome shotgun sequence	AFVW01000020	1106	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00021, whole genome shotgun sequence	AFVW01000021	1101	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00022, whole genome shotgun sequence	AFVW01000022	1094	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00023, whole genome shotgun sequence	AFVW01000023	864	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00024, whole genome shotgun sequence	AFVW01000024	713	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00025, whole genome shotgun sequence	AFVW01000025	560	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00026, whole genome shotgun sequence	AFVW01000026	540	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00027, whole genome shotgun sequence	AFVW01000027	504	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00002A, whole genome shotgun sequence	AFVW02000001	844570	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00003A, whole genome shotgun sequence	AFVW02000002	1380431	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00005B, whole genome shotgun sequence	AFVW02000003	694710	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00013A, whole genome shotgun sequence	AFVW02000004	640314	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00015A, whole genome shotgun sequence	AFVW02000005	398237	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00001, whole genome shotgun sequence	AFVW02000006	745349	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00007, whole genome shotgun sequence	AFVW02000007	332944	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00017, whole genome shotgun sequence	AFVW02000008	101940	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00019, whole genome shotgun sequence	AFVW02000009	5490	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00024, whole genome shotgun sequence	AFVW02000010	864	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00025, whole genome shotgun sequence	AFVW02000011	560	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00026, whole genome shotgun sequence	AFVW02000012	504	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00028, whole genome shotgun sequence	AFVW02000013	452	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00029, whole genome shotgun sequence	AFVW02000014	423	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00031, whole genome shotgun sequence	AFVW02000015	405	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00032, whole genome shotgun sequence	AFVW02000016	284	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00033, whole genome shotgun sequence	AFVW02000017	224	1041522	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Mycobacterium colombiense CECT 3035 contig00034, whole genome shotgun sequence	AFVW02000018	533798	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain CIP 108962 RpoB (rpoB) gene, partial cds	EF521910	711	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain CIP 108962 heat shock protein 65-like (hsp65) gene, partial sequence	EU239785	1462	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain CIP108962 16S ribosomal RNA gene, partial sequence	GQ153275	1495	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain CIP108962 Hsp65 (hsp65) gene, partial cds	GQ153298	401	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain CIP108962 RpoB (rpoB) gene, partial cds	GQ153308	745	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain DSM 45105 RNA polymerase B (rpoB) gene, partial cds	HQ450849	412	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain DSM 45105 elongation factor Tu (tuf) gene, partial cds	HQ450852	706	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense strain DSM 45105 tmRNA (ssrA) gene, partial sequence	HQ659578	366	1041522	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium colombiense culture-collection CECT:3035 Mcolun-1 marker genomic sequence	JN191386	634	339268	*

Availability in culture collectionsStrain availability

[Ref.: #12347]

Culture collection no.

DSM 45105, CECT 3035, CIP 108962

[Ref.: #12347]	Strain history	<- E. Tortoli; 10B
[Ref.: #42061]	Strain history	2005, M. J. Garcia, Madrid, Spain: strain B10

[Ref.: #20218]

Associated Passport(s) in StrainInfo

720774, 690085, 690086

References

#12347

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45105

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42061 ; Curators of the CIP;
* These References are textmined

Search for species Mycobacterium colombiense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF