Clavibacter michiganensis subsp. michiganensis S 05, SO5 | Type strain | CCUG 23363, CIP 104846, DSM 46364, ICPB CM 177, IMET 11518, LMG 7333, NCPPB 2979, PDDCC 2550

Strain identifier

BacDive ID: 7289

Type strain:

Species: Clavibacter michiganensis subsp. michiganensis

Strain Designation: S 05, SO5

Culture col. no.: CCUG 23363, CIP 104846, DSM 46364, ICPB CM 177, IMET 11518, LMG 7333, NCPPB 2979, PDDCC 2550

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #12537]	Domain	Bacteria
[Ref.: #12537]	Phylum	Actinobacteria
[Ref.: #12537]	Class	Actinobacteria
[Ref.: #12537]	Order	Actinomycetales
[Ref.: #12537]	Family	Microbacteriaceae
[Ref.: #12537]	Genus	Clavibacter
[Ref.: #12537]	Species	Clavibacter michiganensis subsp. michiganensis
[Ref.: #12537]	Full Scientific Name	Clavibacter michiganensis subsp. michiganensis (Smith 1910) Davis et al. 1984
[Ref.: #12537]	Strain Designation	S 05, SO5
[Ref.: #12537]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	13-08-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:479*
[Ref.: #20215]	Family	Microbacteriaceae		Int. J. Syst. Bacteriol. 45:418
[Ref.: #20215]	Genus	Clavibacter	gen. nov. (VP)	Int. J. Syst. Bacteriol. 34:107*
[Ref.: #20215]	Species	Clavibacter michiganensis	comb. nov. (VP)	Int. J. Syst. Evol. Microbiol. 9:2007
[Ref.: #20215]	Full Scientific Name	Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984 emend. Nouioui et al. 2018

[Ref.: #20215]	Synonym	Clavibacter michiganensis subsp. michiganensis
[Ref.: #20215]	Synonym	Corynebacterium michiganense
[Ref.: #20215]	Synonym	Corynebacterium michiganense subsp. michiganense
[Ref.: #20215]	Synonym	Clavibacter michiganense
[Ref.: #20215]	Synonym	Clavibacter michiganense subsp. michiganense

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #12537]	Murein short key	B07
[Ref.: #12537]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #12537]

Culture medium

CORYNEBACTERIUM MEDIUM CII (DSMZ Medium 583), 28°C

[Ref.: #12537]

Culture medium growth

[Ref.: #12537]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12537]			growth	28 ̊C

[Ref.: #12537]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #47797]	Sample type/isolated from	Lycopersicon lycopersicum
[Ref.: #47797]	Sampling date	1957
[Ref.: #47797]	Country	Hungary
[Ref.: #47797]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #12537]	Pathogenicity (plant)	yes
[Ref.: #12537]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #12537]	NCBI Reference Sequence	Clavibacter michiganensis strain DSM 46364 16S ribosomal RNA gene, partial sequence	NR_115040	16S	1471	28447
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP 4999 molecular chaperone (groEL) gene, partial cds	FJ971169		335	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 ATP synthase beta subunit (atpD) gene, partial cds	JX889761		561	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 RNA polymerase subunit beta (rpoB) gene, partial cds	JX889850		516	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 70 kDa heat-shock protein (dnaK) gene, partial cds	JX889939		576	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 DNA gyrase subunit (gyrB) gene, partial cds	JX890028		744	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 polyphosphate kinase (ppk) gene, partial cds	JX890117		564	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain CFBP4999 recombinase A (recA) gene, partial cds	JX890206		594	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial 16S rRNA gene, type strain DSM 46364	AM410696	16S	1471	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial ppk gene for polyphosphatkinase, type strain DSM 46364	AM410798		1131	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial recA gene for recombinase A, type strain DSM 46364	AM410824		636	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial gyrB gene for DNA gyrase subunit B, type strain DSM 46364	AM410850		487	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial rpoB gene for RNA polymerase subunit B, type strain DSM 46364	AM410876		1082	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain ICMP 2550 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ205139	16S	516	33013	*
[Ref.: #20218]	EMBL Genome project data	Clavibacter michiganensis subsp. michiganensis partial gyrB gene for gyrase B, strain LMG7333T	FR728065		497	33013	*
[Ref.: #20218]	EMBL Genome project data	Clavibacter michiganensis subsp. michiganensis partial 16S rRNA gene, strain LMG7333T	FR728336	16S	452	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain LMG 7333 16S ribosomal RNA gene, partial sequence	JN603277	16S	1359	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain LMG 7333 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	JN603289	16S	773	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis subsp. michiganensis strain LMG 7333T chromosomal replication initiation protein (dnaA) gene, partial cds	JX259296		665	33013	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis michiganensis LGM 7333 16S-23S rRNA spacer region	U09380	16S	481	28447	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clavibacter michiganensis michiganensis LMG 7333 16S rRNA	U09762	16S	1491	28447	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial tomA gene for tomatinase, isolate NCPPB2979	HE861517		529	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial chpC gene for extracellular serine peptidase, isolate NCPPB2979	HE861530		639	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial gyrB gene for DNA gyrase subunit B, strain NCPPB2979	HE861543		606	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial ligA gene for DNA ligase, strain NCPPB2979	HE861556		544	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial bipA gene for GTP-binding protein typA/bipA homolog, strain NCPPB2979	HE861570		698	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial kdpA gene for potassium-transporting ATPase A chain, strain NCPPB2979	HE861640		693	33013	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clavibacter michiganensis subsp. michiganensis partial sdhA gene for succinate dehydrogenase flavoprotein subunit, strain NCPPB2979	HE861660		700	33013	*

Availability in culture collectionsStrain availability

[Ref.: #12537]

Culture collection no.

CCUG 23363, CIP 104846, DSM 46364, ICPB CM 177, IMET 11518, LMG 7333, NCPPB 2979, PDDCC 2550

[Ref.: #12537]

Strain history

<- IMET <- LMG <- PDDCC <- D. Dye <- ICPB <- Z. Klement, SO5

[Ref.: #20218]

Associated Passport(s) in StrainInfo

149921, 7382, 170284, 7379, 7384, 131784

References

#12537

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46364

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#47797 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23363
* These References are textmined

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