Lactobacillus collinoides Cl3a | Type strain | DSM 20515, ATCC 27612, NCIB 10925

Strain identifier

BacDive ID: 6436

Type strain:

Species: Lactobacillus collinoides

Strain Designation: Cl3a

Culture col. no.: DSM 20515, ATCC 27612, NCIB 10925

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #8887]	Domain	Bacteria
[Ref.: #8887]	Phylum	Firmicutes
[Ref.: #8887]	Class	Bacilli
[Ref.: #8887]	Order	Lactobacillales
[Ref.: #8887]	Family	Lactobacillaceae
[Ref.: #8887]	Genus	Lactobacillus
[Ref.: #8887]	Species	Lactobacillus collinoides
[Ref.: #8887]	Full Scientific Name	Lactobacillus collinoides Carr and Davies 1972
[Ref.: #8887]	Strain Designation	Cl3a
[Ref.: #8887]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Firmicutes
[Ref.: #20215]	Class	Bacilli		Int. J. Syst. Evol. Microbiol. 60:469
[Ref.: #20215]	Family	Lactobacillaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Lactobacillus	genus (AL)	Int. J. Syst. Bacteriol. 30:310 (AL)
[Ref.: #20215]	Species	Lactobacillus collinoides	species (AL)	Int. J. Syst. Bacteriol. 30:311 (AL)
[Ref.: #20215]	Full Scientific Name	Lactobacillus collinoides Carr and Davies 1972

Information on morphological and physiological propertiesMorphology and physiology

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8887]	1945	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+

[Ref.: #8887]	Murein short key	A11.31
[Ref.: #8887]	Murein types	A4alpha L-Lys-D-Asp

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8887]

Culture medium

TOMATO JUICE MEDIUM (DSMZ Medium 264), 26°C, + maltose (1g/L)

[Ref.: #8887]

Culture medium growth

[Ref.: #8887]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #38109]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38109]

Culture medium growth

[Ref.: #38109]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8887]			growth	26 ̊C
[Ref.: #38109]			growth	30 ̊C

[Ref.: #8887]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8887]

Sample type/isolated from

fermenting apple juice

Isolation sources categories

#Engineered

#Food production

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8887]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8887]

GC-content

46.0 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus collinoides gene for 16S ribosomal RNA, partial sequence	AB005893	1549	33960	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus collinoides gene for 16S-23S rRNA intergenic spacer, partial sequence, 300 bp fragment, strain: JCM 1123	AB117955	298	33960	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus collinoides gene for 16S-23S rRNA intergenic spacer, partial sequence, 500 bp fragment, strain: JCM 1123	AB117957	520	33960	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus collinoides gene for 16S rRNA, partial sequence, strain: JCM 1123	AB289061	689	33960	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Lactobacillus collinoides gene for 16S ribosomal RNA, partial sequence	D31683	198	33960	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Lactobacillus collinoides partial recA gene for recombinase A, strain LMG 9194T	AJ621631	600	33960	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Lactobacillus collinoides pheS gene for phenylalanyl-tRNA synthase alpha subunit, type strain LMG 9194T	AM087730	455	33960	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Lactobacillus collinoides rpoA gene for RNA polymerase alpha subunit, type strain LMG 9194T	AM087780	409	33960	*
[Ref.: #8887]	INSDC (WGS)	Lactobacillus collinoides DSM 20515 = JCM 1123 strain DSM 20515, whole genome shotgun sequencing project	AYYR00000000	130	1423733

Availability in culture collectionsStrain availability

[Ref.: #8887]

Culture collection no.

DSM 20515, ATCC 27612, NCIB 10925

[Ref.: #8887]

Strain history

<- ATCC <- J.G. Carr, Cl3a

[Ref.: #20218]

Associated Passport(s) in StrainInfo

13440, 13435, 152010

References

#8887

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20515

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38109 ; Curators of the CIP;
* These References are textmined

Search for species Lactobacillus collinoides in external resources:
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