Halostagnicola larsenii XH-48 | Type strain | DSM 17691, CECT 7116, CGMCC 1.5338, JCM 13463

Strain identifier

BacDive ID: 5969

Type strain:

Species: Halostagnicola larsenii

Strain Designation: XH-48

Culture col. no.: DSM 17691, CECT 7116, CGMCC 1.5338, JCM 13463

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #7132]	Domain	Archaea
[Ref.: #7132]	Phylum	Euryarchaeota
[Ref.: #7132]	Class	Halobacteria
[Ref.: #7132]	Order	Halobacteriales
[Ref.: #7132]	Family	Natrialbaceae
[Ref.: #7132]	Genus	Halostagnicola
[Ref.: #7132]	Species	Halostagnicola larsenii
[Ref.: #7132]	Full Scientific Name	Halostagnicola larsenii Castillo et al. 2006
[Ref.: #7132]	Strain Designation	XH-48
[Ref.: #7132]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	13-08-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Archaea
[Ref.: #20215]	Phylum	Euryarchaeota
[Ref.: #20215]	Class	Halobacteria		Int. J. Syst. Evol. Microbiol. 52:7*
[Ref.: #20215]	Family	Natrialbaceae		Int. J. Syst. Evol. Microbiol. 65:1050*
[Ref.: #20215]	Genus	Halostagnicola	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 56:1519*
[Ref.: #20215]	Species	Halostagnicola larsenii	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 56:1519*
[Ref.: #20215]	Full Scientific Name	Halostagnicola larsenii Castillo et al. 2006

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31790]	Gram stain	negative
[Ref.: #31790]	Cell length	01-03 µm
[Ref.: #31790]	Cell width	0.5-1 µm
[Ref.: #31790]	Cell shape	rod-shaped
[Ref.: #31790]	Motility	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31790]		catalase	+	1.11.1.6
[Ref.: #31790]		cytochrome oxidase	+	1.9.3.1

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31790]		NaCl		growth	15-30	%
[Ref.: #31790]		NaCl		optimum	20	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31790]	Acetic acid	+	carbon source
[Ref.: #31790]	Arabinose	+	carbon source
[Ref.: #31790]	Fructose	+	carbon source
[Ref.: #31790]	Galactose	+	carbon source
[Ref.: #31790]	Glucose	+	carbon source
[Ref.: #31790]	Glutamic acid	+	carbon source
[Ref.: #31790]	Glycerol	+	carbon source
[Ref.: #31790]	Lactose	+	carbon source
[Ref.: #31790]	Maltose	+	carbon source
[Ref.: #31790]	Mannitol	+	carbon source
[Ref.: #31790]	Nitrate	+	reduction
[Ref.: #31790]	Propionic acid	+	carbon source
[Ref.: #31790]	Ribose	+	carbon source
[Ref.: #31790]	Trehalose	+	carbon source
[Ref.: #31790]	Xylose	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #31790]

Observation

aggregates in chains

[Ref.: #31790]

Oxygen tolerance

aerobe

[Ref.: #31790]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #7132]

Culture medium

HALOPIGER MEDIUM (DSMZ Medium 1138), 37°C, ph 7.0-7.5

[Ref.: #7132]

Culture medium growth

[Ref.: #7132]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #7132]	growth	37 ̊C
[Ref.: #31790]	growth	25-50 ̊C
[Ref.: #31790]	optimum	37 ̊C

[Ref.: #7132]	Temperature range	mesophilic
[Ref.: #31790]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31790]			optimum	07-08
[Ref.: #31790]			growth	06-09

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #7132]

Sample type/isolated from

sediment of saline Lake Xilinhot (43° 55' N 115° 37' E)

[Ref.: #7132]

Geographic location (country and/or sea, region)

Inner Mongolia

[Ref.: #7132]

Country

China

[Ref.: #7132]

Continent

Asia

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Geographic location

43.9167°/115.6170°

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #7132]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #7132]	GC-content	61.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31790]	GC-content	61 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halostagnicola larsenii gene for 16S rRNA, partial sequence	AB301489	16S	1433	797299	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halostagnicola larsenii gene for RNA polymerase subunit B', complete cds, strain: JCM 13463	AB477193		1830	797299	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halostagnicola larsenii gene for 16S rRNA, complete sequence, strain: JCM 13463	AB663441	16S	1473	797299	*
[Ref.: #20218]	GenBank Genome project data	Halostagnicola larsenii XH-48, complete genome	CP007055	WGS	2789326	797299	*
[Ref.: #20218]	GenBank Genome project data	Halostagnicola larsenii XH-48 plasmid, complete sequence	CP007056		573680	797299	*
[Ref.: #20218]	GenBank Genome project data	Halostagnicola larsenii XH-48 plasmid, complete sequence	CP007057		464581	797299	*
[Ref.: #20218]	GenBank Genome project data	Halostagnicola larsenii XH-48 plasmid, complete sequence	CP007058		172663	797299	*
[Ref.: #20218]	GenBank Genome project data	Halostagnicola larsenii XH-48 plasmid, complete sequence	CP007059		130926	797299	*
[Ref.: #7132]	EMBL Direct submission	Halostagnicola larsenii partial 16S rRNA gene, type strain XH-48T	AM117571	16S	1372	797299

Availability in culture collectionsStrain availability

[Ref.: #7132]

Culture collection no.

DSM 17691, CECT 7116, CGMCC 1.5338, JCM 13463

[Ref.: #7132]

Strain history

<- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; XH-48 <- A. M. Castillo et al.

[Ref.: #20218]

Associated Passport(s) in StrainInfo

689874, 689872, 689873, 689875

References

#7132

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17691

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31790

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28061 (see below)

#28061

IJSEM 1519 2006 ( DOI 10.1099/ijs.0.64286-0 )

* These References are textmined

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