Thermocrinis ruber OC 1/4 | Type strain | DSM 12173

Strain identifier

BacDive ID: 522

Type strain:

Species: Thermocrinis ruber

Strain Designation: OC 1/4

Culture col. no.: DSM 12173

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4632]	Domain	Bacteria
[Ref.: #4632]	Phylum	Aquificae
[Ref.: #4632]	Class	Aquificae
[Ref.: #4632]	Order	Aquificales
[Ref.: #4632]	Family	Aquificaceae
[Ref.: #4632]	Genus	Thermocrinis
[Ref.: #4632]	Species	Thermocrinis ruber
[Ref.: #4632]	Full Scientific Name	Thermocrinis ruber Huber et al. 1999
[Ref.: #4632]	Strain Designation	OC 1/4
[Ref.: #4632]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Aquificae
[Ref.: #20215]	Class	Aquificae		Int. J. Syst. Evol. Microbiol. 52:685
[Ref.: #20215]	Family	Aquificaceae		Int. J. Syst. Evol. Microbiol. 52:685
[Ref.: #20215]	Genus	Thermocrinis	gen. nov. (VL)	Int. J. Syst. Bacteriol. 49:341
[Ref.: #20215]	Species	Thermocrinis ruber	sp. nov. (VL)	Int. J. Syst. Bacteriol. 49:341
[Ref.: #20215]	Full Scientific Name	Thermocrinis ruber Huber et al. 1999

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4632]

Culture medium

OS MEDIUM (DSMZ Medium 887), 80°C

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Culture medium growth

[Ref.: #4632]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #4632]			growth	80 ̊C

[Ref.: #4632]

Temperature range

hyperthermophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4632]

Sample type/isolated from

pink filamentous cell masses from a hot spring

[Ref.: #4632]

Geographic location (country and/or sea, region)

Wyoming, Yellowstone National Park, Octopus Spring

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Country

USA

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Continent

North America

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4632]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #4632]

GC-content

47.5 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Thermocrinis ruber tRNA-Ile gene and tRNA-Ala gene, type strain DSM 12173T	AM259527	340	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenobacter hydrogenophilus CTP synthase gene, partial cds	AY188752	366	35835	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenobacter hydrogenophilus CTP synthase gene, partial cds	AY254054	357	35835	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenobacter hydrogenophilus inorganic pyrophosphatase gene, partial cds	AY254208	267	35835	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenobacter hydrogenophilus sigma 70 gene, partial cds	AY254209	930	35835	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber alanyl tRNA synthetase gene, partial cds	AY254210	165	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber Hsp70 gene, partial cds	AY254212	1095	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber inorganic pyrophosphatase gene, partial cds	AY254213	342	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber Hsp60 gene, partial cds	AY254214	249	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber strain DSM 12173 glucose-inhibited division protein (gidA) gene, partial cds	AY739872	393	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber strain DSM 12173 RNA polymerase beta' subunit (rpoC) gene, partial cds	AY739873	573	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber strain DSM 12173 preprotein translocase subunit A (secA) gene, partial cds	AY739874	399	932678	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Thermocrinis ruber DSM 12173 DNA polymerase I gene, partial cds	AY845414	507	932678	*

Availability in culture collectionsStrain availability

[Ref.: #4632]

Culture collection no.

DSM 12173

[Ref.: #4632]

Strain history

<- R. Huber and K. O. Stetter; OC 1/4

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163050

References

#4632

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12173

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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