Xenorhabdus indica 28 | Type strain | DSM 17382, CIP 108830

Strain identifier

BacDive ID: 5194

Type strain:

Species: Xenorhabdus indica

Strain Designation: 28

Culture col. no.: DSM 17382, CIP 108830

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #6939]	Domain	Bacteria
[Ref.: #6939]	Phylum	Proteobacteria
[Ref.: #6939]	Class	Gammaproteobacteria
[Ref.: #6939]	Order	Enterobacteriales, not validated
[Ref.: #6939]	Family	Morganellaceae
[Ref.: #6939]	Genus	Xenorhabdus
[Ref.: #6939]	Species	Xenorhabdus indica
[Ref.: #6939]	Full Scientific Name	Xenorhabdus indica Somvanshi et al. 2009
[Ref.: #6939]	Strain Designation	28
[Ref.: #6939]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Genus	Xenorhabdus	gen. nov. (VL)	Int. J. Syst. Bacteriol. 42:327
[Ref.: #20215]	Species	Xenorhabdus indica	sp. nov. (VL)	Int. J. Syst. Evol. Microbiol. 59:2647
[Ref.: #20215]	Full Scientific Name	Xenorhabdus indica Somvanshi et al. 2009

Information on morphological and physiological propertiesMorphology and physiology

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6939]	3935	-	+	+/-	+/-	-	+/-	+	-	+	-	+/-	-	+	+/-	+/-	-	-	+/-	-	-	-
[Ref.: #6939]	5091	-	+	+	+	-	+	+	-	+	-	+	-	+	-	+	-	-	+	-	-	-

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6939]	2156	-	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #6939]	17	-	+	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #6939]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b), 30°C

[Ref.: #6939]

Culture medium growth

[Ref.: #6939]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #38328]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38328]

Culture medium growth

[Ref.: #38328]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6939]			growth	30 ̊C
[Ref.: #38328]			growth	30 ̊C

[Ref.: #6939]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #6939]

Sample type/isolated from

entomopathogenic nematode Steinernema thermophilum

[Ref.: #6939]

Country

India

[Ref.: #6939]

Continent

Asia

Isolation sources categories

#Host-associates

#Invertebrates

#Nematoda

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #6939]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 DNA gyrase subunit B (gyrB) gene, partial cds	EU934538	864	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 50S ribosomal protein L2 (rplB) gene, partial cds	FJ809013	683	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 DNA recombination protein (recA) gene, partial cds	FJ823421	646	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 DNA polymerase III beta chain (dnaN) gene, partial cds	FJ831470	828	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 glutamyl-tRNA synthetase (gltX) gene, partial cds	FJ840520	1057	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM 17382 translation initiation factor IF-2 (infB) gene, partial cds	JF798421	981	333964	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Xenorhabdus indica strain DSM17382 23S ribosomal RNA gene, partial sequence	JN591584	839	333964	*
[Ref.: #6939]	EMBL Direct submission	Xenorhabdus sp. 28 16S rRNA gene, type strain 28T	AM040494	1530	333964

Availability in culture collectionsStrain availability

[Ref.: #6939]

Culture collection no.

DSM 17382, CIP 108830

[Ref.: #6939]

Strain history

<- V.S. Somvanshi

[Ref.: #20218]

Associated Passport(s) in StrainInfo

691058, 691059

References

#6939

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17382

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38328 ; Curators of the CIP;
* These References are textmined

Search for species Xenorhabdus indica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF