Dietzia timorensis ID05-A0528 | Type strain | DSM 45568, BTCC B-560, JCM 18295, NBRC 104184

Strain identifier

BacDive ID: 4263

Type strain:

Species: Dietzia timorensis

Strain Designation: ID05-A0528

Culture col. no.: DSM 45568, BTCC B-560, JCM 18295, NBRC 104184

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #17660]	Domain	Bacteria
[Ref.: #17660]	Phylum	Actinobacteria
[Ref.: #17660]	Class	Actinobacteria
[Ref.: #17660]	Order	Actinomycetales
[Ref.: #17660]	Family	Dietziaceae
[Ref.: #17660]	Genus	Dietzia
[Ref.: #17660]	Species	Dietzia timorensis
[Ref.: #17660]	Full Scientific Name	Dietzia timorensis Yamamura et al. 2010
[Ref.: #17660]	Strain Designation	ID05-A0528
[Ref.: #17660]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Dietziaceae
[Ref.: #20215]	Genus	Dietzia	gen. nov. (VP)	Int. J. Syst. Bacteriol. 45:33*
[Ref.: #20215]	Species	Dietzia timorensis	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 60:453*
[Ref.: #20215]	Full Scientific Name	Dietzia timorensis Yamamura et al. 2010

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #29394]	Gram stain	positive
[Ref.: #29394]	Cell shape	rod-shaped
[Ref.: #29394]	Motility	no

[Ref.: #21435]	Colony color	Golden yellow
[Ref.: #21435]	Incubation period	10-14 days
[Ref.: #21435]	Cultivation medium used	ISP 2

[Ref.: #21435]	Colony color	Sand yellow (1002)
[Ref.: #21435]	Incubation period	10-14 days
[Ref.: #21435]	Cultivation medium used	ISP 5

[Ref.: #21435]	Colony color	Light ivory (1015)
[Ref.: #21435]	Incubation period	10-14 days
[Ref.: #21435]	Cultivation medium used	ISP 7

[Ref.: #21435]	Colony color	Sand yellow (1002)
[Ref.: #21435]	Incubation period	10-14 days
[Ref.: #21435]	Cultivation medium used	Suter with tyrosine

[Ref.: #21435]	Colony color	Light ivory (1015)
[Ref.: #21435]	Incubation period	10-14 days
[Ref.: #21435]	Cultivation medium used	Suter without tyrosine

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21435]		NaCl		maximum	10	%
[Ref.: #29394]		NaCl		growth	0-7	%

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21435]	551	-	-	-	+	-	-	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21435]	1072	not determinedn.d.	+	+/-	+	+	+	+/-	+	+/-	-	+	+/-	-	-	-	+	+	-	-	-

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29394]	Adonitol	+	carbon source
[Ref.: #21435]	Arabinose	-
[Ref.: #29394]	Arabinose	+	carbon source
[Ref.: #29394]	Cellobiose	+	carbon source
[Ref.: #21435]	Cellulose	-
[Ref.: #29394]	Esculin	+	hydrolysis
[Ref.: #21435]	Fructose	+
[Ref.: #29394]	Fructose	+	carbon source
[Ref.: #29394]	Fucose	+	carbon source
[Ref.: #29394]	Galactose	+	carbon source
[Ref.: #21435]	Glucose	+
[Ref.: #29394]	Glucose	+	carbon source
[Ref.: #29394]	Glycerol	+	carbon source
[Ref.: #29394]	Glycogen	+	carbon source
[Ref.: #21435]	Inositol	-
[Ref.: #29394]	L-Arabitol	+	carbon source
[Ref.: #29394]	Lactose	+	carbon source
[Ref.: #29394]	Maltose	+	carbon source
[Ref.: #29394]	Mannitol	+	carbon source
[Ref.: #21435]	Mannose	-
[Ref.: #29394]	Mannose	+	carbon source
[Ref.: #29394]	Melibiose	+	carbon source
[Ref.: #29394]	N-Acetylglucosamine	+	carbon source
[Ref.: #21435]	Raffinose	-
[Ref.: #29394]	Raffinose	+	carbon source
[Ref.: #21435]	Rhamnose	-
[Ref.: #29394]	Rhamnose	+	carbon source
[Ref.: #29394]	Ribose	+	carbon source
[Ref.: #29394]	Salicin	+	carbon source
[Ref.: #29394]	Sorbitol	+	carbon source
[Ref.: #21435]	Sucrose	-
[Ref.: #29394]	Sucrose	+	carbon source
[Ref.: #29394]	Trehalose	+	carbon source
[Ref.: #29394]	Xylitol	+	carbon source
[Ref.: #21435]	Xylose	-
[Ref.: #29394]	Xylose	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #29394]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #17660]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #17660]

Culture medium growth

[Ref.: #17660]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #21435]

Culture medium

ISP 2

[Ref.: #21435]

Culture medium growth

[Ref.: #21435]

Culture medium composition

expand / minimize

[Ref.: #21435]

Culture medium

ISP 5

[Ref.: #21435]

Culture medium growth

[Ref.: #21435]

Culture medium composition

expand / minimize

[Ref.: #21435]

Culture medium

ISP 7

[Ref.: #21435]

Culture medium growth

[Ref.: #21435]

Culture medium composition

expand / minimize

[Ref.: #21435]

Culture medium

Suter with tyrosine

[Ref.: #21435]

Culture medium growth

[Ref.: #21435]

Culture medium composition

expand / minimize

[Ref.: #21435]

Culture medium

Suter without tyrosine

[Ref.: #21435]

Culture medium growth

[Ref.: #21435]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17660]			growth	28 ̊C
[Ref.: #29394]			growth	10-37 ̊C

[Ref.: #17660]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #17660]

Sample type/isolated from

soil

[Ref.: #17660]

Geographic location (country and/or sea, region)

Kupang, West Timor

[Ref.: #17660]

Country

Indonesia

[Ref.: #17660]

Continent

Asia

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #17660]	Pathogenicity (human)	yes
[Ref.: #17660]	Biosafety level	1	Risk group (German classification)
[Ref.: #21435]	Biosafety level	L1	German classification

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #17660]	GC-content	65.5 mol%
[Ref.: #29394]	GC-content	65.5 mol%

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #17660]	DDBJ EMBL Direct submission		AB377289

Availability in culture collectionsStrain availability

[Ref.: #17660]

Culture collection no.

DSM 45568, BTCC B-560, JCM 18295, NBRC 104184

[Ref.: #17660]

Strain history

<- NBRC <- K. Ando (NITE) and Y. Widyastuti(LIPI); ID05-A0528

[Ref.: #20218]

Associated Passport(s) in StrainInfo

852607, 852608

References

#17660

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45568

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#21435

Wink, J.: Compendium of Actinobacteria . HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29394

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #25801 (see below)

#25801

IJSEM 451 2010 ( DOI 10.1099/ijs.0.012229-0 )

* These References are textmined

Search for species Dietzia timorensis in external resources:
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