Desulfovibrio bastinii SRL 4225 | Type strain | DSM 16055, ATCC BAA-903

Strain identifier

BacDive ID: 4147

Type strain:

Species: Desulfovibrio bastinii

Strain Designation: SRL 4225

Culture col. no.: DSM 16055, ATCC BAA-903

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #6244]	Domain	Bacteria
[Ref.: #6244]	Phylum	Proteobacteria
[Ref.: #6244]	Class	Deltaproteobacteria
[Ref.: #6244]	Order	Desulfovibrionales
[Ref.: #6244]	Family	Desulfovibrionaceae
[Ref.: #6244]	Genus	Desulfovibrio
[Ref.: #6244]	Species	Desulfovibrio bastinii
[Ref.: #6244]	Full Scientific Name	Desulfovibrio bastinii Magot et al. 2004
[Ref.: #6244]	Strain Designation	SRL 4225
[Ref.: #6244]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Deltaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Desulfovibrionaceae
[Ref.: #20215]	Genus	Desulfovibrio	genus (AL)	Int. J. Syst. Bacteriol. 30:290 (AL)
[Ref.: #20215]	Species	Desulfovibrio bastinii	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 54:1696*
[Ref.: #20215]	Full Scientific Name	Desulfovibrio bastinii Magot et al. 2004

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23373]	Gram stain	negative
[Ref.: #23373]	Cell length	2-3 µm
[Ref.: #23373]	Cell width	0.5 µm
[Ref.: #23373]	Cell shape	vibrio-shaped
[Ref.: #23373]	Motility	yes
[Ref.: #23373]	Flagellum arrangement	polar

[Ref.: #23373]

Colony color

grey to dark grey

[Ref.: #23373]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23373]		NaCl		growth	10-120	g/L
[Ref.: #23373]		NaCl		optimum	40	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23373]	Butanol	+	growth
[Ref.: #23373]	Elemental sulfur	+	electron acceptor
[Ref.: #23373]	Ethanol	+	growth
[Ref.: #23373]	Fumaric acid	-	electron acceptor
[Ref.: #23373]	Fumaric acid	+	growth
[Ref.: #23373]	Glycerol	+	growth
[Ref.: #23373]	Lactic acid	+	growth
[Ref.: #23373]	Lactic acid	+	oxidation
[Ref.: #23373]	Malic acid	+	growth
[Ref.: #23373]	Nitrate	-	electron acceptor
[Ref.: #23373]	Pyruvic acid	+	fermentation
[Ref.: #23373]	Pyruvic acid	+	growth
[Ref.: #23373]	Sulfate	+	electron acceptor
[Ref.: #23373]	Sulfite	+	electron acceptor
[Ref.: #23373]	Thiosulfate	+	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #6244]	Oxygen tolerance	anaerobe
[Ref.: #23373]	Oxygen tolerance	anaerobe

[Ref.: #23373]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #6244]

Culture medium

DESULFOVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 496), 37°C, anaerobic

[Ref.: #6244]

Culture medium growth

[Ref.: #6244]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #6244]	growth	37 ̊C
[Ref.: #23373]	growth	20-50 ̊C
[Ref.: #23373]	optimum	35-40 ̊C

[Ref.: #6244]	Temperature range	mesophilic
[Ref.: #23373]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23373]			optimum	5.8-6.2
[Ref.: #23373]			growth	4.2-7.4

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #6244]

Sample type/isolated from

oil pipeline water

[Ref.: #6244]

Geographic location (country and/or sea, region)

Emeraude Oilfield

[Ref.: #6244]

Country

Congo, Republic of the

[Ref.: #6244]

Continent

Africa

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Sample type/isolated from

oilfield production water
collected from a pipeline of Emeraude Oilfield

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	-

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #6244]	GC-content	44.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23368]	GC-content	44.6 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00001.1_C1, whole genome shotgun sequence	AUCX01000001	139338	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00001.1_C2, whole genome shotgun sequence	AUCX01000002	241422	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00002.2_C1, whole genome shotgun sequence	AUCX01000003	111498	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00002.2_C2, whole genome shotgun sequence	AUCX01000004	164484	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00003.3_C, whole genome shotgun sequence	AUCX01000005	247375	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00004.4_C, whole genome shotgun sequence	AUCX01000006	242591	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00005.5_C, whole genome shotgun sequence	AUCX01000007	242095	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00006.6_C, whole genome shotgun sequence	AUCX01000008	240880	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00007.7_C, whole genome shotgun sequence	AUCX01000009	233956	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00008.8_C, whole genome shotgun sequence	AUCX01000010	220716	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00009.9_C1, whole genome shotgun sequence	AUCX01000011	928	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00009.9_C2, whole genome shotgun sequence	AUCX01000012	191159	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00010.10_C, whole genome shotgun sequence	AUCX01000013	153012	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00011.11_C, whole genome shotgun sequence	AUCX01000014	138085	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00012.12_C, whole genome shotgun sequence	AUCX01000015	133644	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00013.13_C, whole genome shotgun sequence	AUCX01000016	125298	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00014.14_C, whole genome shotgun sequence	AUCX01000017	120985	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00015.15_C, whole genome shotgun sequence	AUCX01000018	114199	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00016.16_C, whole genome shotgun sequence	AUCX01000019	111133	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00017.17_C, whole genome shotgun sequence	AUCX01000020	102153	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00018.18_C, whole genome shotgun sequence	AUCX01000021	78376	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00019.19_C, whole genome shotgun sequence	AUCX01000022	76569	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00020.20_C, whole genome shotgun sequence	AUCX01000023	69700	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00021.21_C, whole genome shotgun sequence	AUCX01000024	54151	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00022.22_C, whole genome shotgun sequence	AUCX01000025	50178	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00023.23_C, whole genome shotgun sequence	AUCX01000026	42373	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00024.24_C, whole genome shotgun sequence	AUCX01000027	33218	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00025.25_C, whole genome shotgun sequence	AUCX01000028	30956	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00026.26_C, whole genome shotgun sequence	AUCX01000029	30675	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00027.27_C, whole genome shotgun sequence	AUCX01000030	27442	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00028.28_C, whole genome shotgun sequence	AUCX01000031	26910	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00029.29_C, whole genome shotgun sequence	AUCX01000032	26538	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00030.30_C, whole genome shotgun sequence	AUCX01000033	25289	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00031.31_C, whole genome shotgun sequence	AUCX01000034	19757	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00032.32_C, whole genome shotgun sequence	AUCX01000035	18787	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00033.33_C, whole genome shotgun sequence	AUCX01000036	12286	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00034.34_C, whole genome shotgun sequence	AUCX01000037	2914	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00035.35_C, whole genome shotgun sequence	AUCX01000038	1778	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00036.36_C, whole genome shotgun sequence	AUCX01000039	1745	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00037.37_C, whole genome shotgun sequence	AUCX01000040	1441	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00038.38_C, whole genome shotgun sequence	AUCX01000041	1381	1121441	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00039.39_C, whole genome shotgun sequence	AUCX01000042	1284	1121441	*
[Ref.: #6244]	GenBank Direct submission	Desulfovibrio bastinii strain SRL4225 16S ribosomal RNA gene, partial sequence	AY359868	1476	47157

Availability in culture collectionsStrain availability

[Ref.: #6244]

Culture collection no.

DSM 16055, ATCC BAA-903

[Ref.: #6244]

Strain history

<- M. Magot, Université de Pau et des Pays de l'Adour, IBEAS, Pau, France; SRL 4225 <- M. Magot {1991}

[Ref.: #20218]

Associated Passport(s) in StrainInfo

381383, 381382

References

#6244

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16055

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23368

Nurettin Sahin, Akio Tani, Recep Kotan, Ivo Sedl?cek, Kazuhide Kimbara, Abdurrahman U. Tamer: Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture. IJSEM 61: 2247 - 2253 2011 ( DOI 10.1099/ijs.0.026138-0 )

#23373

Michel Magot, Odile Basso, Christ?le Tardy-Jacquenod, Pierre Caumette: Desulfovibrio bastinii sp. nov. and Desulfovibrio gracilis sp. nov., moderately halophilic, sulfate-reducing bacteria isolated from deep subsurface oilfield water. IJSEM 54: 1693 - 1697 2004 ( DOI 10.1099/ijs.0.02977-0 )

* These References are textmined

Search for species Desulfovibrio bastinii in external resources:
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