Desulfovibrio oxyclinae P1B | Type strain | DSM 11498

Strain identifier

BacDive ID: 4133

Type strain:

Species: Desulfovibrio oxyclinae

Strain Designation: P1B

Culture col. no.: DSM 11498

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4389]	Domain	Bacteria
[Ref.: #4389]	Phylum	Proteobacteria
[Ref.: #4389]	Class	Deltaproteobacteria
[Ref.: #4389]	Order	Desulfovibrionales
[Ref.: #4389]	Family	Desulfovibrionaceae
[Ref.: #4389]	Genus	Desulfovibrio
[Ref.: #4389]	Species	Desulfovibrio oxyclinae
[Ref.: #4389]	Full Scientific Name	Desulfovibrio oxyclinae Krekeler et al. 2000
[Ref.: #4389]	Strain Designation	P1B
[Ref.: #4389]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Deltaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Desulfovibrionaceae
[Ref.: #20215]	Genus	Desulfovibrio	genus (AL)	Int. J. Syst. Bacteriol. 30:290 (AL)
[Ref.: #20215]	Species	Desulfovibrio oxyclinae	sp. nov. (VL)	Int. J. Syst. Evol. Microbiol. 50:1699
[Ref.: #20215]	Full Scientific Name	Desulfovibrio oxyclinae Krekeler et al. 2000

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #4389]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4389]

Culture medium

DESULFOVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 496), 30°C, anaerobic

[Ref.: #4389]

Culture medium growth

[Ref.: #4389]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #4389]			growth	30 ̊C

[Ref.: #4389]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4389]

Sample type/isolated from

hypersaline cyanobacterial mat

[Ref.: #4389]

Geographic location (country and/or sea, region)

Sinai, Solar Lake

[Ref.: #4389]

Country

Egypt

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Continent

Africa

Isolation sources categories

#Environmental	#Microbial community	#Microbial mats
#Host-associates	#Microbial	#Cyanobacteria
#Condition	#Saline	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4389]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_0.1_C, whole genome shotgun sequence	AQXE01000001	524744	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_1.2_C, whole genome shotgun sequence	AQXE01000002	298637	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_2.3_C, whole genome shotgun sequence	AQXE01000003	268064	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_3.4_C, whole genome shotgun sequence	AQXE01000004	236068	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_4.5_C, whole genome shotgun sequence	AQXE01000005	224144	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_5.6_C, whole genome shotgun sequence	AQXE01000006	219675	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_6.7_C, whole genome shotgun sequence	AQXE01000007	218126	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_7.8_C, whole genome shotgun sequence	AQXE01000008	189844	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_8.9_C, whole genome shotgun sequence	AQXE01000009	187374	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_9.10_C, whole genome shotgun sequence	AQXE01000010	176062	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_10.11_C, whole genome shotgun sequence	AQXE01000011	139465	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_11.12_C, whole genome shotgun sequence	AQXE01000012	104109	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_12.13_C, whole genome shotgun sequence	AQXE01000013	102904	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_13.14_C, whole genome shotgun sequence	AQXE01000014	80468	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_14.15_C, whole genome shotgun sequence	AQXE01000015	76198	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_15.16_C, whole genome shotgun sequence	AQXE01000016	75124	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_16.17_C, whole genome shotgun sequence	AQXE01000017	58120	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_17.18_C, whole genome shotgun sequence	AQXE01000018	52682	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_18.19_C, whole genome shotgun sequence	AQXE01000019	21615	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_19.20_C, whole genome shotgun sequence	AQXE01000020	17959	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_20.21_C, whole genome shotgun sequence	AQXE01000021	9696	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_21.22_C, whole genome shotgun sequence	AQXE01000022	8450	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_22.23_C, whole genome shotgun sequence	AQXE01000023	7711	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_23.24_C, whole genome shotgun sequence	AQXE01000024	6950	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_24.25_C, whole genome shotgun sequence	AQXE01000025	5014	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_25.26_C, whole genome shotgun sequence	AQXE01000026	4369	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_26.27_C, whole genome shotgun sequence	AQXE01000027	2553	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_27.28_C, whole genome shotgun sequence	AQXE01000028	2228	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_28.29_C, whole genome shotgun sequence	AQXE01000029	1893	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_29.30_C, whole genome shotgun sequence	AQXE01000030	1726	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_30.31_C, whole genome shotgun sequence	AQXE01000031	1422	1121459	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio oxyclinae DSM 11498 B149DRAFT_scaffold_31.32_C, whole genome shotgun sequence	AQXE01000032	1187	1121459	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio oxyclinae strain DSM 11498 dissimilatory bisulfite reductase alpha subunit (dsrA) gene, partial cds	AY626033	1050	63560	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio oxyclinae strain DSM 11498 dissimilatory bisulfite reductase beta subunit (dsrB) gene, partial cds	AY626034	699	63560	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio oxyclinae strain DSM 11498 AprB (aprB) and AprA (aprA) genes, partial cds	EF442883	2329	63560	*
[Ref.: #4389]	GenBank Direct submission		U33316

Availability in culture collectionsStrain availability

[Ref.: #4389]

Culture collection no.

DSM 11498

[Ref.: #4389]

Strain history

<- H. Cypionka, Univ. Oldenburg, Germany; P1B <- Y. Cohen, Hebrew Univ. Jerusalem, Israel {1990}

[Ref.: #20218]

Associated Passport(s) in StrainInfo

162694

References

#4389

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11498

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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