Clostridium drakei SL1 | Type strain | DSM 12750, ATCC BAA-623

Strain identifier

BacDive ID: 2836

Type strain:

Species: Clostridium drakei

Strain Designation: SL1

Culture col. no.: DSM 12750, ATCC BAA-623

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4801]	Domain	Bacteria
[Ref.: #4801]	Phylum	Firmicutes
[Ref.: #4801]	Class	Clostridia
[Ref.: #4801]	Order	Clostridiales
[Ref.: #4801]	Family	Clostridiaceae
[Ref.: #4801]	Genus	Clostridium
[Ref.: #4801]	Species	Clostridium drakei
[Ref.: #4801]	Full Scientific Name	Clostridium drakei Liou et al. 2005
[Ref.: #4801]	Strain Designation	SL1
[Ref.: #4801]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Firmicutes
[Ref.: #20215]	Class	Clostridia		Int. J. Syst. Evol. Microbiol. 60:469
[Ref.: #20215]	Family	Clostridiaceae		Int. J. Syst. Bacteriol. 30:235
[Ref.: #20215]	Genus	Clostridium	genus (AL)	Int. J. Syst. Bacteriol. 30:277 (AL)
[Ref.: #20215]	Species	Clostridium drakei	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:2090*
[Ref.: #20215]	Full Scientific Name	Clostridium drakei Liou et al. 2005

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #43392]	Gram stain	negative
[Ref.: #43392]	Cell length	3-4 µm
[Ref.: #43392]	Cell width	0.6 µm
[Ref.: #43392]	Cell shape	rod-shaped
[Ref.: #43392]	Motility	yes

	Metabolite	Production
[Ref.: #43392]	Acetic acid	yes
[Ref.: #43392]	Acetoin	no
[Ref.: #43392]	Butanol	yes
[Ref.: #43392]	Butyrate	yes
[Ref.: #43392]	Ethanol	yes
[Ref.: #43392]	Indole	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43392]		Acetoin	-
[Ref.: #43392]		Glucose		+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43392]	Alanine	+	growth
[Ref.: #43392]	Amygdalin	-	growth
[Ref.: #43392]	Arginine	+	growth
[Ref.: #43392]	Asparagine	+	growth
[Ref.: #43392]	Aspartic acid	+	growth
[Ref.: #43392]	Betaine	+	growth
[Ref.: #43392]	Butanol	+	growth
[Ref.: #43392]	Carbon dioxide	+	growth
[Ref.: #43392]	carbon monoxide	+	growth
[Ref.: #43392]	Casamino acids	+	growth
[Ref.: #43392]	Cellobiose	+	growth
[Ref.: #43392]	Cellulose	+	growth
[Ref.: #43392]	Choline	+	growth
[Ref.: #43392]	Citric acid	+	growth
[Ref.: #43392]	D-Arabinose	-	growth
[Ref.: #43392]	Dihydrogen	+	growth
[Ref.: #43392]	DL-Lactate	+	growth
[Ref.: #43392]	DL-Malate	+	growth
[Ref.: #43392]	Esculin	-	hydrolysis
[Ref.: #43392]	Ethanol	+	growth
[Ref.: #43392]	Ferulic acid	+	assimilation
[Ref.: #43392]	Fructose	+	growth
[Ref.: #43392]	Fucose	+	growth
[Ref.: #43392]	Fumaric acid	+	growth
[Ref.: #43392]	Galactose	+	growth
[Ref.: #43392]	Gelatin	-	hydrolysis
[Ref.: #43392]	Gluconate	+	growth
[Ref.: #43392]	Glucose	+	growth
[Ref.: #43392]	Glucose	+	fermentation
[Ref.: #43392]	Glycerol	+	growth
[Ref.: #43392]	Histidine	+	growth
[Ref.: #43392]	Inositol	+	growth
[Ref.: #43392]	L-Arabinose	+	growth
[Ref.: #43392]	L-Glutamic acid	+	growth
[Ref.: #43392]	Lactose	-	growth
[Ref.: #43392]	Maltose	-	growth
[Ref.: #43392]	Mannitol	+	growth
[Ref.: #43392]	Mannose	+	growth
[Ref.: #43392]	Melezitose	+	growth
[Ref.: #43392]	Melibiose	-	growth
[Ref.: #43392]	Methanol	-	growth
[Ref.: #43392]	Nitrate	-	reduction
[Ref.: #43392]	Pectin	-	growth
[Ref.: #43392]	Propanol	+	growth
[Ref.: #43392]	Raffinose	-	growth
[Ref.: #43392]	Rhamnose	+	growth
[Ref.: #43392]	Ribose	+	growth
[Ref.: #43392]	Serine	+	growth
[Ref.: #43392]	Sorbitol	-	growth
[Ref.: #43392]	Starch	+	growth
[Ref.: #43392]	Succinic acid	-	growth
[Ref.: #43392]	Sucrose	+	growth
[Ref.: #43392]	Syringate	+	growth
[Ref.: #43392]	Trehalose	-	growth
[Ref.: #43392]	Vanillic acid	+	assimilation
[Ref.: #43392]	Xylose	+	growth
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #4801]	Oxygen tolerance	anaerobe
[Ref.: #43392]	Oxygen tolerance	obligate anaerobe

[Ref.: #43392]

Ability of spore formation

yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4801]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b), 30°C, anaerobic

[Ref.: #4801]

Culture medium growth

[Ref.: #4801]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #4801]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110), 30°C, anaerobic

[Ref.: #4801]

Culture medium growth

[Ref.: #4801]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #43392]

Culture medium

Basal medium

[Ref.: #43392]

Culture medium growth

[Ref.: #43392]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4801]	growth	30 ̊C
[Ref.: #43392]	growth	18-42 ̊C
[Ref.: #43392]	optimum	30-37 ̊C

[Ref.: #4801]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43392]			optimum	5.4-7.5
[Ref.: #43392]			growth	4.6-7.8

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4801]

Sample type/isolated from

acidic coal mine pond

[Ref.: #4801]

Country

Germany

[Ref.: #4801]

Continent

Europe

[Ref.: #43392]

Sample type/isolated from

sediment collected from an acidic coal-mine pond

[Ref.: #43392]

Geographic location (country and/or sea, region)

East-central Germany

[Ref.: #43392]

Country

Germany

[Ref.: #43392]

Continent

Europe

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Aquatic	#Pond (small)
#Condition	#Acidic	-
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Pond (small)
#Condition	#Acidic	-
#Engineered	#Other	#Mine

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4801]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #4801]	GC-content	30.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #43392]	GC-content	30-32 mol%	high performance liquid chromatography (HPLC)

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	EMBL Genome project data	Clostridium drakei partial fhs gene for formyltetrahydrofolate synthetase, strain DSM 12750	FR850047	886	332101	*
[Ref.: #20218]	EMBL Genome project data	Clostridium drakei partial cooS gene for carbon monoxide dehydrogenase activity/acetyl-CoA synthase, strain DSM 12750	FR850054	885	332101	*
[Ref.: #4801]	EMBL Direct submission	Clostridium drakei partial 16S rRNA gene, type strain SL1T	Y18813	1491	332101

Availability in culture collectionsStrain availability

[Ref.: #4801]

Culture collection no.

DSM 12750, ATCC BAA-623

[Ref.: #4801]

Strain history

<- K. Küsel, University of Bayreuth, Department of Ecological Microbiology, Bayreuth, Germany; SL1 (Clostridium scatologenes) <- K. Küsel {1996}

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163334, 621190

References

#4801

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12750

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43392

Jack S.-C. Liou, David L. Balkwill, Gwendolyn R. Drake, Ralph S. Tanner: Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov.. IJSEM 55: 2085 - 2091 2005 ( DOI 10.1099/ijs.0.63482-0 )

* These References are textmined

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