Ciceribacter lividus MSSRFBL1 | Type strain | DSM 25528, KCTC 32403

Strain identifier

BacDive ID: 24486

Type strain:

Species: Ciceribacter lividus

Strain Designation: MSSRFBL1

Culture col. no.: DSM 25528, KCTC 32403

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #21294]	Domain	Bacteria
[Ref.: #21294]	Phylum	Proteobacteria
[Ref.: #21294]	Class	Alphaproteobacteria
[Ref.: #21294]	Order	Rhizobiales
[Ref.: #21294]	Family	Rhizobiaceae
[Ref.: #21294]	Genus	Ciceribacter
[Ref.: #21294]	Species	Ciceribacter lividus
[Ref.: #21294]	Full Scientific Name	Ciceribacter lividus Kathiravan et al. 2013
[Ref.: #21294]	Strain Designation	MSSRFBL1
[Ref.: #21294]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Rhizobiaceae		Int. J. Syst. Bacteriol. 30:237
[Ref.: #20215]	Genus	Ciceribacter	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 63:4488*
[Ref.: #20215]	Species	Ciceribacter lividus	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 63:4488*
[Ref.: #20215]	Full Scientific Name	Ciceribacter lividus Kathiravan et al. 2013

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31010]	Gram stain	negative
[Ref.: #31010]	Cell length	1.5 µm
[Ref.: #31010]	Cell width	0.4 µm
[Ref.: #31010]	Cell shape	rod-shaped
[Ref.: #31010]	Motility	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31010]		catalase	+	1.11.1.6
[Ref.: #31010]		urease	+	3.5.1.5

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31010]		NaCl		growth	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31010]	Arabinose	+	carbon source
[Ref.: #31010]	Citric acid	+	carbon source
[Ref.: #31010]	Fructose	+	carbon source
[Ref.: #31010]	Maltose	+	carbon source
[Ref.: #31010]	Mannose	+	carbon source
[Ref.: #31010]	Ribose	+	carbon source
[Ref.: #31010]	Sucrose	+	carbon source

[Ref.: #31010]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #21294]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #21294]

Culture medium growth

[Ref.: #21294]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #21294]	growth	28 ̊C
[Ref.: #31010]	growth	25-37 ̊C
[Ref.: #31010]	optimum	28 ̊C

[Ref.: #21294]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31010]			optimum	7
[Ref.: #31010]			growth	6.0-8.5

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #21294]

Sample type/isolated from

rhizosphere soil of chick pea (Cicer arietinum L.)

[Ref.: #21294]

Geographic location (country and/or sea, region)

Tamil Nadu, Kannivadi (10° 22' 44.40'' N 77° 49' 48.0'' E)

[Ref.: #21294]

Country

India

[Ref.: #21294]

Continent

Asia

[Ref.: #21294]

Geographic location

10.3790°/77.8300°

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host-associates	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #21294]	GC-content	71 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31010]	GC-content	71 mol%

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #21294]	GenBank Direct submission	Ciceribacter lividus strain MSSRFBL1 dihydrogenase reductase (nifH) gene, partial cds	KC189952	352	1197950
[Ref.: #21294]	GenBank Direct submission	Ciceribacter lividus strain MSSRFBL1 threonine C (thrC) gene, partial cds	KC189951	619	1197950
[Ref.: #21294]	GenBank Direct submission	Ciceribacter lividus strain MSSRFBL1 recombinase A (recA) gene, partial cds	KC189949	525	1197950
[Ref.: #21294]	GenBank Direct submission	Ciceribacter lividus strain MSSRFBL1 heat shock protein (dnaK) gene, partial cds	KC189950	277	1197950
[Ref.: #21294]	GenBank Direct submission	Ciceribacter lividus strain MSSRFBL1 16S ribosomal RNA gene, partial sequence	JQ230000	1392	1197950

Availability in culture collectionsStrain availability

[Ref.: #21294]

Culture collection no.

DSM 25528, KCTC 32403

[Ref.: #21294]

Strain history

<- R. Kathiravan, M.S. Swaminathan Research Foundation, Taramani, India; MSSRFBL

[Ref.: #20218]

Associated Passport(s) in StrainInfo

893737, 893738

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#21294

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25528

#31010

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #27340 (see below)

#27340

IJSEM 4484 2013 ( DOI 10.1099/ijs.0.049726-0 )

* These References are textmined

Search for species Ciceribacter lividus in external resources:
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