Chryseobacterium vrystaatense | Type strain | DSM 25206, CCUG 50970, LMG 22846

Strain identifier

BacDive ID: 23023

Type strain:

Species: Chryseobacterium vrystaatense

Culture col. no.: DSM 25206, CCUG 50970, LMG 22846

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #19030]	Domain	Bacteria
[Ref.: #19030]	Phylum	Bacteroidetes
[Ref.: #19030]	Class	Flavobacteriia
[Ref.: #19030]	Order	Flavobacteriales
[Ref.: #19030]	Family	Flavobacteriaceae
[Ref.: #19030]	Genus	Chryseobacterium
[Ref.: #19030]	Species	Chryseobacterium vrystaatense
[Ref.: #19030]	Full Scientific Name	Chryseobacterium vrystaatense de Beer et al. 2005
[Ref.: #19030]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Bacteroidetes
[Ref.: #20215]	Class	Flavobacteriia		Int. J. Syst. Evol. Microbiol. 62:1017
[Ref.: #20215]	Family	Flavobacteriaceae
[Ref.: #20215]	Genus	Chryseobacterium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 44:829*
[Ref.: #20215]	Species	Chryseobacterium vrystaatense	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:2152*
[Ref.: #20215]	Full Scientific Name	Chryseobacterium vrystaatense de Beer et al. 2005 emend. Montero-Calasanz et al. 2014

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31527]	Gram stain	negative
[Ref.: #31527]	Motility	no

	Enzyme	Enzyme activity	EC number
[Ref.: #31527]	catalase	+	1.11.1.6
[Ref.: #31527]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31527]	urease	+	3.5.1.5

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31527]		NaCl		growth	01-04	%
[Ref.: #31527]		NaCl		optimum	1.5	%

	Metabolite production	Metabolite	Production
[Ref.: #31527]		Hydrogen sulfide	yes
[Ref.: #31527]		Indole	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31527]		Indole	+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31527]	Acetic acid	+	carbon source
[Ref.: #31527]	Asparagine	+	carbon source
[Ref.: #31527]	Aspartic acid	+	carbon source
[Ref.: #31527]	Dextrin	+	carbon source
[Ref.: #31527]	Esculin	+	hydrolysis
[Ref.: #31527]	Glucose	+	carbon source
[Ref.: #31527]	Glutamic acid	+	carbon source
[Ref.: #31527]	Glycerol	+	carbon source
[Ref.: #31527]	Inosine	+	carbon source
[Ref.: #31527]	Mannitol	+	carbon source
[Ref.: #31527]	Mannose	+	carbon source
[Ref.: #31527]	Serine	+	carbon source
[Ref.: #31527]	Succinic acid	+	carbon source
[Ref.: #31527]	Threonine	+	carbon source
[Ref.: #31527]	Thymidine	+	carbon source
[Ref.: #31527]	Trehalose	+	carbon source
[Ref.: #31527]	Tween 40	+	carbon source
[Ref.: #31527]	Tween 80	+	carbon source
[Ref.: #31527]	Uridine	+	carbon source
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[Ref.: #31527]

Observation

aggregates in clumps

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #19030]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220), 28°C

[Ref.: #19030]

Culture medium growth

[Ref.: #19030]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #33267]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33267]

Culture medium growth

[Ref.: #33267]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19030]	growth	28 ̊C
[Ref.: #31527]	growth	04-32 ̊C
[Ref.: #31527]	optimum	18 ̊C
[Ref.: #33267]	growth	25 ̊C

[Ref.: #19030]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #19030]

Sample type/isolated from

raw chicken

[Ref.: #19030]

Geographic location (country and/or sea, region)

Vrystaat, chicken-processing plant

[Ref.: #19030]

Country

South Africa

[Ref.: #19030]

Continent

Africa

Isolation sources categories

#Engineered	#Food production	#Meat
#Host-associates	#Birds	#Chicken

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #19030]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #31527]

GC-content

37.1 mol%

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #19030]	EMBL Direct submission		AJ871397
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Chryseobacterium vrystaatense strain LMG22846 DNA gyrase subunit B (gyrB) gene, partial cds	HQ645931	689	307480	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Chryseobacterium vrystaatense strain LMG 22846 DNA gyrase subunit B (gyrB) gene, partial cds	HQ829942	1547	307480	*

Availability in culture collectionsStrain availability

[Ref.: #19030]

Culture collection no.

DSM 25206, CCUG 50970, LMG 22846

[Ref.: #19030]

Strain history

<- CCUG <- P. Vandamme, LMG <- H. de Beer, Central University of Technology, Bloemfontein, South Africa

[Ref.: #20218]

Associated Passport(s) in StrainInfo

621230, 382494

References

#19030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25206

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31527

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #27821 (see below)

#33267 ; Curators of the CIP;

#27821

IJSEM 2149 2005 ( DOI 10.1099/ijs.0.63746-0 )

* These References are textmined

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