Ochrobactrum daejeonense MJ11 | Type strain | DSM 26944, JCM 16234, KCTC 22458

Strain identifier

BacDive ID: 22940

Type strain:

Species: Ochrobactrum daejeonense

Strain Designation: MJ11

Culture col. no.: DSM 26944, JCM 16234, KCTC 22458

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #19127]	Domain	Bacteria
[Ref.: #19127]	Phylum	Proteobacteria
[Ref.: #19127]	Class	Alphaproteobacteria
[Ref.: #19127]	Order	Rhizobiales
[Ref.: #19127]	Family	Brucellaceae
[Ref.: #19127]	Genus	Ochrobactrum
[Ref.: #19127]	Species	Ochrobactrum daejeonense
[Ref.: #19127]	Full Scientific Name	Ochrobactrum daejeonense Woo et al. 2011
[Ref.: #19127]	Strain Designation	MJ11
[Ref.: #19127]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Brucellaceae		Int. J. Syst. Bacteriol. 30:235
[Ref.: #20215]	Genus	Ochrobactrum	gen. nov. (VP)	Int. J. Syst. Bacteriol. 38:406*
[Ref.: #20215]	Species	Ochrobactrum daejeonense	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 61:2695*
[Ref.: #20215]	Full Scientific Name	Ochrobactrum daejeonense Woo et al. 2011

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #19127]

Incubation period

2-3 days

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #19127]		catalase	+	1.11.1.6
[Ref.: #19127]		cytochrome-c oxidase	+	1.9.3.1

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19127]	4593	+	-	-	-	+/-	-	-	-	+	+	+	+	+	+	-	+/-	-	+	-	+	not determinedn.d.

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #19127]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220), 30°C

[Ref.: #19127]

Culture medium growth

[Ref.: #19127]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #19127]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 30°C

[Ref.: #19127]

Culture medium growth

[Ref.: #19127]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #19127]			growth	30 ̊C

[Ref.: #19127]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #19127]

Sample type/isolated from

sludge of a leachate treatment plant

[Ref.: #19127]

Geographic location (country and/or sea, region)

Daejeon

[Ref.: #19127]

Country

Republic of Korea

[Ref.: #19127]

Continent

Asia

Isolation sources categories

#Engineered	#Waste	#Water treatment plant
#Environmental	#Aquatic	#Mud (Sludge)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #19127]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #19127]

GC-content

59.3 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #19127]	GenBank Direct submission	Ochrobactrum daejeonense strain MJ11 16S ribosomal RNA gene, partial sequence	HQ171203	1389	659015
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 chorismate synthase (aroC) gene, partial cds	KF866311	433	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 70 kDa heat shock protein (dnaK) gene, partial cds	KF866320	534	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	KF866329	578	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 25 kDa outer membrane protein (omp25) gene, partial cds	KF866338	390	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 recombinase A (recA) gene, partial cds	KF866347	490	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 DNA-dependent RNA polymerase beta subunit (rpoB) gene, partial cds	KF866356	501	659015	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ochrobactrum daejeonense strain JCM16234 anthranilate synthase (trpE) gene, partial cds	KF866365	564	659015	*

Availability in culture collectionsStrain availability

[Ref.: #19127]

Culture collection no.

DSM 26944, JCM 16234, KCTC 22458

[Ref.: #19127]

Strain history

<- JCM <- M.-J. Lee; MJ11

[Ref.: #20218]

Associated Passport(s) in StrainInfo

867699, 867700

References

#19127

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26944

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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