Bradyrhizobium jicamae PAC68 | Type strain | DSM 19632, CECT 7395, LMG 24556

Strain identifier

BacDive ID: 1816

Type strain:

Species: Bradyrhizobium jicamae

Strain Designation: PAC68

Culture col. no.: DSM 19632, CECT 7395, LMG 24556

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #8222]	Domain	Bacteria
[Ref.: #8222]	Phylum	Proteobacteria
[Ref.: #8222]	Class	Alphaproteobacteria
[Ref.: #8222]	Order	Rhizobiales
[Ref.: #8222]	Family	Bradyrhizobiaceae
[Ref.: #8222]	Genus	Bradyrhizobium
[Ref.: #8222]	Species	Bradyrhizobium jicamae
[Ref.: #8222]	Full Scientific Name	Bradyrhizobium jicamae Ramírez-Bahena et al. 2009
[Ref.: #8222]	Strain Designation	PAC68
[Ref.: #8222]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Bradyrhizobiaceae
[Ref.: #20215]	Genus	Bradyrhizobium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 32:137*
[Ref.: #20215]	Species	Bradyrhizobium jicamae	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 59:1933*
[Ref.: #20215]	Full Scientific Name	Bradyrhizobium jicamae Ramírez-Bahena et al. 2009

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23330]	Gram stain	negative
[Ref.: #23330]	Cell shape	rod-shaped

[Ref.: #23330]	Colony color	pearl white
[Ref.: #23330]	Cultivation medium used	YMA

	Enzyme	Enzyme activity	EC number
[Ref.: #23330]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23330]	beta-galactosidase	-	3.2.1.23
[Ref.: #23330]	urease	+/-	3.5.1.5

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23330]		NaCl		growth	1	%

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic intermediate	Concentration		Antibiotic resistance	Concentration
[Ref.: #23330]	Ampicillin				yes	1	µg/mL
[Ref.: #23330]	Cefuroxime	yes	15	µg/mL
[Ref.: #23330]	Ciprofloxacin	yes	5	µg/mL
[Ref.: #23330]	Cloxacillin							yes	1	µg/mL
[Ref.: #23330]	Erythromycin	yes	50	µg/mL
[Ref.: #23330]	Gentamicin	yes	20	µg/mL
[Ref.: #23330]	Kanamycin	yes		µg/mL
[Ref.: #23330]	Neomycin	yes	5	µg/mL
[Ref.: #23330]	Penicillin							yes	2	µg/mL
[Ref.: #23330]	Polymyxin B	yes	300	µg/mL
[Ref.: #23330]	Tetracycline	yes	15	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23330]	Adipic acid	+	carbon source
[Ref.: #23330]	Caprate	-	carbon source
[Ref.: #23330]	Cellobiose	-	carbon source
[Ref.: #23330]	Citric acid	-	carbon source
[Ref.: #23330]	D-Xylose	-	builds acid from
[Ref.: #23330]	Esculin	-	hydrolysis
[Ref.: #23330]	Fructose	+	builds acid from
[Ref.: #23330]	Gluconate	+	carbon source
[Ref.: #23330]	Glucose	+	carbon source
[Ref.: #23330]	Glycine	-	nitrogen source
[Ref.: #23330]	L-Arabinose	+	carbon source
[Ref.: #23330]	L-Malate	+	carbon source
[Ref.: #23330]	L-Proline	+/-	nitrogen source
[Ref.: #23330]	L-Rhamnose	-	builds acid from
[Ref.: #23330]	L-Rhamnose	-	carbon source
[Ref.: #23330]	L-Sorbose	-	builds acid from
[Ref.: #23330]	L-Sorbose	-	builds base from
[Ref.: #23330]	L-Sorbose	+	carbon source
[Ref.: #23330]	Lactic acid	-	carbon source
[Ref.: #23330]	Lactose	-	builds acid from
[Ref.: #23330]	Maltose	-	carbon source
[Ref.: #23330]	Mannitol	-	carbon source
[Ref.: #23330]	Mannose	-	carbon source
[Ref.: #23330]	Melezitose	+	carbon source
[Ref.: #23330]	N-Acetylglucosamine	-	carbon source
[Ref.: #23330]	Nitrate	+	reduction
[Ref.: #23330]	Phenylacetic acid	-	carbon source
[Ref.: #23330]	Pyruvic acid	-	carbon source
[Ref.: #23330]	Succinic acid	-	carbon source
[Ref.: #23330]	Trehalose	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8222]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98), 28°C

[Ref.: #8222]

Culture medium growth

[Ref.: #8222]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #23330]

Culture medium

YMA

[Ref.: #23330]

Culture medium growth

		Temperature
[Ref.: #8222]	growth	28 ̊C
[Ref.: #23330]	growth	5-32 ̊C
[Ref.: #23330]	optimum	28 ̊C

[Ref.: #8222]	Temperature range	mesophilic
[Ref.: #23330]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23330]			optimum	7.0
[Ref.: #23330]			growth	6.0-8.0

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8222]

Sample type/isolated from

nodules of Pachyrhizus erosus

[Ref.: #8222]

Geographic location (country and/or sea, region)

Copan

[Ref.: #8222]

Country

Honduras

[Ref.: #8222]

Continent

Middle and South America

Isolation sources categories

#Host-associates	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8222]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8222]	GC-content	64.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #23330]	GC-content	64.1 mol%	thermal denaturation, midpoint method (Tm)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 nitrogenase reductase (nifH) gene, partial cds	HM047127	719	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 nodulation protein C (nodC) gene, partial cds	HM047129	589	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 recombinase A (recA) gene, partial cds	HM047133	530	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 recombination protein A (recA) gene, partial cds	HQ587415	463	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 RNA polymerase subunit beta (rpoB) gene, partial cds	HQ587647	771	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 N-acetylglucosaminyltransferase (nodC) gene, partial cds	HQ588109	728	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 DNA gyrase subunit beta (gyrB) gene, partial cds	HQ873309	622	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae strain LMG 24556 Hsp70 class chaperone (dnaK) gene, partial cds	JF308945	369	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae hypothetical protein (SMc00019) gene, partial cds	JX064207	309	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae TruA (truA) gene, partial cds	JX064279	492	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae ThrA (thrA) gene, partial cds	JX064351	491	280332	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium jicamae acyltransferase nodulation protein A (nodA) gene, partial cds	KC509199	465	280332	*
[Ref.: #8222]	GenBank Direct submission	Bradyrhizobium jicamae strain PAC68 16S ribosomal RNA gene, partial sequence	AY624134	1484	280332

Availability in culture collectionsStrain availability

[Ref.: #8222]

Culture collection no.

DSM 19632, CECT 7395, LMG 24556

[Ref.: #8222]

Strain history

<- E. Velázquez, Depart. Microbiol. y Gen., Univ. Salamanca, Spain <- M. Grum; PAC68

[Ref.: #20218]

Associated Passport(s) in StrainInfo

844818, 844471, 844472

References

#8222

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19632

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23330

Martha Helena Ram?rez-Bahena, Alvaro Peix, Ra?l Rivas, Mar?a Camacho, Dulce N. Rodr?guez-Navarro, Pedro F. Mateos, Eustoquio Mart?nez-Molina, Anne Willems, Encarna Vel?zquez: Bradyrhizobium pachyrhizi sp. nov. and Bradyrhizobium jicamae sp. nov., isolated from effective nodules of Pachyrhizus erosus. IJSEM 59: 1929 - 1934 2009 ( DOI 10.1099/ijs.0.006320-0 )

* These References are textmined

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