Cyclobacterium marinum | Type strain | DSM 745, ATCC 25205

Strain identifier

BacDive ID: 17717

Type strain:

Species: Cyclobacterium marinum

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #419]	Domain	Bacteria
[Ref.: #419]	Phylum	Bacteroidetes
[Ref.: #419]	Class	Cytophagia
[Ref.: #419]	Order	Cytophagales
[Ref.: #419]	Family	Cyclobacteriaceae
[Ref.: #419]	Genus	Cyclobacterium
[Ref.: #419]	Species	Cyclobacterium marinum
[Ref.: #419]	Full Scientific Name	Cyclobacterium marinum (Raj 1976) Raj and Maloy 1990
[Ref.: #419]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Bacteroidetes
[Ref.: #20215]	Class	Cytophagia		Int. J. Syst. Evol. Microbiol. 62:1
[Ref.: #20215]	Family	Cyclobacteriaceae		Int. J. Syst. Evol. Microbiol. 62:1
[Ref.: #20215]	Genus	Cyclobacterium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 40:345*
[Ref.: #20215]	Species	Cyclobacterium marinum	comb. nov. (VP)	Int. J. Syst. Bacteriol. 40:346*
[Ref.: #20215]	Full Scientific Name	Cyclobacterium marinum corrig. (Raj 1976) Raj and Maloy 1990 emend. Hahnke et al. 2016

[Ref.: #20215]	Synonym	Flectobacillus marinus
[Ref.: #20215]	Synonym	Microcyclus marinus
[Ref.: #20215]	Synonym	Cyclobacterium marinus

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #43342]	Gram stain	negative
[Ref.: #43342]	Cell length	0.9-1.2 µm
[Ref.: #43342]	Cell width	0.3-0.4 µm
[Ref.: #43342]	Cell shape	ring-shaped
[Ref.: #43342]	Motility	no

[Ref.: #43342]	Colony color	pink
[Ref.: #43342]	Colony shape	circular
[Ref.: #43342]	Cultivation medium used	Marine agar 2216

	Enzyme	Enzyme activity	EC number
[Ref.: #43342]	acid phosphatase	+	3.1.3.2
[Ref.: #43342]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43342]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43342]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43342]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43342]	alpha-glucosidase		3.2.1.20
[Ref.: #43342]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43342]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43342]	beta-galactosidase	+	3.2.1.23
[Ref.: #43342]	beta-glucosidase	+	3.2.1.21
[Ref.: #43342]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43342]	catalase	+	1.11.1.6
[Ref.: #43342]	cystine arylamidase	+	3.4.11.3
[Ref.: #43342]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43342]	esterase (C 4)	+
[Ref.: #43342]	esterase Lipase (C 8)	+
[Ref.: #43342]	leucine arylamidase	+	3.4.11.1
[Ref.: #43342]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43342]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43342]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43342]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43342]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43342]		NaCl		growth	0-10	%

	Metabolite	Antibiotic sensitivity
[Ref.: #43342]	Ampicillin	yes
[Ref.: #43342]	Carbenicillin	yes
[Ref.: #43342]	Gentamicin	no
[Ref.: #43342]	Lincomycin	yes
[Ref.: #43342]	Neomycin	no
[Ref.: #43342]	Oleandomycin	yes
[Ref.: #43342]	Polymyxin B	no

	Metabolite	Production
[Ref.: #43342]	Acetoin	no
[Ref.: #43342]	Hydrogen sulfide	no
[Ref.: #43342]	Indole	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43342]	2-Dehydro-D-gluconate	-	assimilation
[Ref.: #43342]	5-Dehydro-D-gluconate	-	assimilation
[Ref.: #43342]	Adipic acid	-	assimilation
[Ref.: #43342]	Adonitol	-	builds acid from
[Ref.: #43342]	Adonitol	-	assimilation
[Ref.: #43342]	Agar	-	degradation
[Ref.: #43342]	Amygdalin	+	assimilation
[Ref.: #43342]	Arbutin	+	assimilation
[Ref.: #43342]	Caprate	-	assimilation
[Ref.: #43342]	Carboxymethylcellulose	-	degradation
[Ref.: #43342]	Casein	-	degradation
[Ref.: #43342]	Cellulose	-	degradation
[Ref.: #43342]	Chitin	-	degradation
[Ref.: #43342]	Citric acid	-	builds acid from
[Ref.: #43342]	Citric acid	-	assimilation
[Ref.: #43342]	D-Arabitol	-	assimilation
[Ref.: #43342]	D-Cellobiose	+	builds acid from
[Ref.: #43342]	D-Fructose	+	assimilation
[Ref.: #43342]	D-Fucose	+	assimilation
[Ref.: #43342]	D-Galactose	+	builds acid from
[Ref.: #43342]	D-Glucose	-	builds acid from
[Ref.: #43342]	D-Lactose	+	builds acid from
[Ref.: #43342]	D-Maltose	+	builds acid from
[Ref.: #43342]	D-Mannose	+	assimilation
[Ref.: #43342]	D-Melibiose	+	builds acid from
[Ref.: #43342]	D-Sorbitol	-	assimilation
[Ref.: #43342]	D-Trehalose	+	builds acid from
[Ref.: #43342]	D-Turanose	+	assimilation
[Ref.: #43342]	D-Xylose	+	assimilation
[Ref.: #43342]	DL-Malate	-	builds acid from
[Ref.: #43342]	DL-Malate	-	assimilation
[Ref.: #43342]	DNA	-	degradation
[Ref.: #43342]	Dulcitol	-	builds acid from
[Ref.: #43342]	Dulcitol	-	assimilation
[Ref.: #43342]	Erythritol	-	assimilation
[Ref.: #43342]	Esculin	+	hydrolysis
[Ref.: #43342]	Fumaric acid	-	builds acid from
[Ref.: #43342]	Gelatin	-	degradation
[Ref.: #43342]	Gentiobiose	-	assimilation
[Ref.: #43342]	Gentiobiose	+	assimilation
[Ref.: #43342]	Glucose	+	assimilation
[Ref.: #43342]	Glycerol	-	builds acid from
[Ref.: #43342]	Glycerol	-	assimilation
[Ref.: #43342]	Glycogen	-	assimilation
[Ref.: #43342]	Inulin	+	assimilation
[Ref.: #43342]	L-Arabitol	-	assimilation
[Ref.: #43342]	L-Fucose	+	builds acid from
[Ref.: #43342]	L-Fucose	+	assimilation
[Ref.: #43342]	L-Rhamnose	+	builds acid from
[Ref.: #43342]	L-Sorbose	-	builds acid from
[Ref.: #43342]	Lyxose	+	assimilation
[Ref.: #43342]	Mannitol	-	builds acid from
[Ref.: #43342]	Melezitose	+	assimilation
[Ref.: #43342]	Methyl alpha-D-mannoside	+	assimilation
[Ref.: #43342]	Methyl beta-D-xylopyranoside	+	assimilation
[Ref.: #43342]	Methyl D-glucoside	+	assimilation
[Ref.: #43342]	myo-Inositol	-	builds acid from
[Ref.: #43342]	myo-Inositol	-	assimilation
[Ref.: #43342]	N-Acetylglucosamine	+	assimilation
[Ref.: #43342]	Nitrate	-	reduction
[Ref.: #43342]	Phenylacetic acid	-	assimilation
[Ref.: #43342]	Raffinose	+	builds acid from
[Ref.: #43342]	Ribose	+	assimilation
[Ref.: #43342]	Salicin	+	assimilation
[Ref.: #43342]	Sorbose	+	assimilation
[Ref.: #43342]	Starch	-	degradation
[Ref.: #43342]	Sucrose	+	builds acid from
[Ref.: #43342]	Tagatose	+	assimilation
[Ref.: #43342]	Tween 20	-	degradation
[Ref.: #43342]	Tween 80	-	degradation
[Ref.: #43342]	Urea	-	degradation
[Ref.: #43342]	Xylitol	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #43342]

Nutrition type

chemoorganotroph

[Ref.: #43342]

Pigment name

Flexirubin

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #419]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514), 22°C

[Ref.: #419]

Culture medium growth

[Ref.: #419]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #43342]

Culture medium

Marine agar 2216

[Ref.: #43342]

Culture medium growth

		Temperature
[Ref.: #419]	growth	20-25 ̊C
[Ref.: #43342]	optimum	25-30 ̊C
[Ref.: #43342]	growth	42 ̊C

[Ref.: #419]	Temperature range	psychrophilic
[Ref.: #43342]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43342]			growth	4-40

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #419]

Sample type/isolated from

coelomic fluid of a sand dollar

[Ref.: #419]

Geographic location (country and/or sea, region)

California, Newport Beach

[Ref.: #419]

Country

USA

[Ref.: #419]

Continent

North America

Isolation sources categories

#Host-associates	#Invertebrates	-
#Host Body-Site	-	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #419]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #419]	GC-content	38.3 mol%
[Ref.: #43342]	GC-content	41.9 mol%	thermal denaturation, midpoint method (Tm)

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Cyclobacterium marinum DSM 745 transfer-messenger mRNA Cyclo_marin_745, single chain mature transcript	HG784151	405	880070	*
[Ref.: #419]	NCBI Reference Sequence	Cyclobacterium marinum DSM 745, complete genome	NC_015914	6221273	880070
[Ref.: #419]	GenBank Direct submission	Cyclobacterium marinum strain DSM 745 16S ribosomal RNA gene, partial sequence	AY533665	1479	880070
[Ref.: #43342]	GenBank	16S rRNA gene sequence	AJ575266

Availability in culture collectionsStrain availability

[Ref.: #419]

Culture collection no.

DSM 745, ATCC 25205

[Ref.: #419]

Strain history

<- H.D. Raj (Microcyclus marinus) <- P. Johnson

[Ref.: #20218]

Associated Passport(s) in StrainInfo

156946, 31301

References

#419	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 745

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43342

; 0 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )

* These References are textmined

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