Streptomyces fragilis PD 04926 | Type strain | DSM 40044, ATCC 23908, CBS 804.68, IFO 12862, ISP 5044, NBRC 12862, NRRL 2424, RIA 1111

Strain identifier

BacDive ID: 15205

Type strain:

Species: Streptomyces fragilis

Strain Designation: PD 04926

Culture col. no.: DSM 40044, ATCC 23908, CBS 804.68, IFO 12862, ISP 5044, NBRC 12862, NRRL 2424, RIA 1111

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #9123]	Domain	Bacteria
[Ref.: #9123]	Phylum	Actinobacteria
[Ref.: #9123]	Class	Actinobacteria
[Ref.: #9123]	Order	Actinomycetales
[Ref.: #9123]	Family	Streptomycetaceae
[Ref.: #9123]	Genus	Streptomyces
[Ref.: #9123]	Species	Streptomyces fragilis
[Ref.: #9123]	Full Scientific Name	Streptomyces fragilis Anderson et al. 1956
[Ref.: #9123]	Strain Designation	PD 04926
[Ref.: #9123]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Streptomycetaceae
[Ref.: #20215]	Genus	Streptomyces	genus (AL)	Int. J. Syst. Bacteriol. 30:368 (AL)
[Ref.: #20215]	Species	Streptomyces fragilis	species (AL)	Int. J. Syst. Bacteriol. 30:382 (AL)
[Ref.: #20215]	Full Scientific Name	Streptomyces fragilis Anderson et al. 1956

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #9123]	Name of produced compound	azaserine
[Ref.: #20216]	Name of produced compound	Azaserine

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18471]	56	+	-	-	-	-	-	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

	Metabolite	Utilization activity
[Ref.: #18471]	Arabinose	+
[Ref.: #18471]	Cellulose	-
[Ref.: #18471]	Fructose	-
[Ref.: #18471]	Glucose	+
[Ref.: #18471]	Inositol	-
[Ref.: #18471]	Mannitol	-
[Ref.: #18471]	Raffinose	-
[Ref.: #18471]	Rhamnose	-
[Ref.: #18471]	Sucrose	+
[Ref.: #18471]	Xylose	-

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #9123]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65), 28°C

[Ref.: #9123]

Culture medium growth

[Ref.: #9123]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9123]			growth	28 ̊C
[Ref.: #18471]			optimum	28 ̊C

[Ref.: #9123]	Temperature range	mesophilic
[Ref.: #18471]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #9123]

Sample type/isolated from

soil

[Ref.: #9123]

Country

Argentina

[Ref.: #9123]

Continent

Middle and South America

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #9123]	Biosafety level	1	Risk group (German classification)
[Ref.: #18471]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces fragilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4638	D44280	120	67301	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces fragilis gene for 16S rRNA, partial sequence, strain: NBRC 12862	AB184200	1474	67301	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Streptomyces fragilis strain NRRL 2424 16S ribosomal RNA gene, partial sequence	AY999917	1500	67301	*

Availability in culture collectionsStrain availability

[Ref.: #9123]

Culture collection no.

DSM 40044, ATCC 23908, CBS 804.68, IFO 12862, ISP 5044, NBRC 12862, NRRL 2424, RIA 1111

[Ref.: #9123]

Strain history

<- E.B. Shirling, ISP <- L. Anderson, Res. Lab., Parke, Davis and Co., PD 04926

[Ref.: #20218]

Associated Passport(s) in StrainInfo

164590, 103398, 229262, 103402, 103399, 334199, 103404, 103406

References

#9123

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40044

#18471

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

Search for species Streptomyces fragilis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF