Streptomyces bikiniensis | Type strain | DSM 40581, ATCC 11062, ETH 14303, IMRU 3514, ISP 5581, JCM 4011, NRRL B-1049

Strain identifier

BacDive ID: 15049

Type strain:

Species: Streptomyces bikiniensis

Culture col. no.: DSM 40581, ATCC 11062, ETH 14303, IMRU 3514, ISP 5581, JCM 4011, NRRL B-1049

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #9661]	Domain	Bacteria
[Ref.: #9661]	Phylum	Actinobacteria
[Ref.: #9661]	Class	Actinobacteria
[Ref.: #9661]	Order	Actinomycetales
[Ref.: #9661]	Family	Streptomycetaceae
[Ref.: #9661]	Genus	Streptomyces
[Ref.: #9661]	Species	Streptomyces bikiniensis
[Ref.: #9661]	Full Scientific Name	Streptomyces bikiniensis Johnstone and Waksman 1947
[Ref.: #9661]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Streptomycetaceae
[Ref.: #20215]	Genus	Streptomyces	genus (AL)	Int. J. Syst. Bacteriol. 30:368 (AL)
[Ref.: #20215]	Species	Streptomyces bikiniensis	species (AL)	Int. J. Syst. Bacteriol. 30:374 (AL)
[Ref.: #20215]	Full Scientific Name	Streptomyces bikiniensis Johnstone and Waksman 1947

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #19478]	Colony color	Yellow
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 2

[Ref.: #19478]	Colony color	Yellow - Green
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 3

[Ref.: #19478]	Colony color	Yellow
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 4

[Ref.: #19478]	Colony color	Yellow
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 5

[Ref.: #19478]	Colony color	Yellow
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 6

[Ref.: #19478]	Colony color	Yellow
[Ref.: #19478]	Incubation period	10-14 days
[Ref.: #19478]	Cultivation medium used	ISP 7

[Ref.: #9661]	Name of produced compound	streptomycin II
[Ref.: #20216]	Name of produced compound	Streptomycin
[Ref.: #20216]	Name of produced compound	Glucoseisomerase
[Ref.: #19478]	Name of produced compound	Chalcomycin

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19478]	338	+	+	+	+	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

	Metabolite	Utilization activity
[Ref.: #19478]	Arabinose	-
[Ref.: #19478]	Cellulose	-
[Ref.: #19478]	Fructose	-
[Ref.: #19478]	Glucose	+
[Ref.: #19478]	Inositol	-
[Ref.: #19478]	Mannitol	-
[Ref.: #19478]	Raffinose	-
[Ref.: #19478]	Rhamnose	-
[Ref.: #19478]	Sucrose	-
[Ref.: #19478]	Xylose	-

[Ref.: #19478]	Multicellular complex forming ability	yes
[Ref.: #19478]	Multicellular complex name	Aerial Mycelium
[Ref.: #19478]	Multicellular complex color	Gray
[Ref.: #19478]	Medium Name (multicellularity)	ISP 2

[Ref.: #19478]	Multicellular complex forming ability	yes
[Ref.: #19478]	Multicellular complex name	Aerial Mycelium
[Ref.: #19478]	Multicellular complex color	Gray
[Ref.: #19478]	Medium Name (multicellularity)	ISP 3

[Ref.: #19478]	Multicellular complex forming ability	yes
[Ref.: #19478]	Multicellular complex name	Aerial Mycelium
[Ref.: #19478]	Multicellular complex color	Gray
[Ref.: #19478]	Medium Name (multicellularity)	ISP 4

[Ref.: #19478]	Multicellular complex forming ability	yes
[Ref.: #19478]	Multicellular complex name	Aerial Mycelium
[Ref.: #19478]	Multicellular complex color	Gray
[Ref.: #19478]	Medium Name (multicellularity)	ISP 5

[Ref.: #19478]	Multicellular complex forming ability	no
[Ref.: #19478]	Medium Name (multicellularity)	ISP 6

[Ref.: #19478]	Multicellular complex forming ability	yes
[Ref.: #19478]	Multicellular complex name	Aerial Mycelium
[Ref.: #19478]	Multicellular complex color	Gray
[Ref.: #19478]	Medium Name (multicellularity)	ISP 7

[Ref.: #19478]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth
[Ref.: #19478]	Type of spore	spore
[Ref.: #19478]	Ability of spore formation	yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #9661]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65), 28°C

[Ref.: #9661]

Culture medium growth

[Ref.: #9661]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #19478]

Culture medium

ISP 2

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

[Ref.: #19478]

Culture medium

ISP 3

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

[Ref.: #19478]

Culture medium

ISP 4

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

[Ref.: #19478]

Culture medium

ISP 5

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

[Ref.: #19478]

Culture medium

ISP 6

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

[Ref.: #19478]

Culture medium

ISP 7

[Ref.: #19478]

Culture medium growth

[Ref.: #19478]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9661]			growth	28 ̊C
[Ref.: #19478]			optimum	28 ̊C

[Ref.: #9661]	Temperature range	mesophilic
[Ref.: #19478]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #9661]

Sample type/isolated from

soil

[Ref.: #9661]

Geographic location (country and/or sea, region)

Bikini atoll

[Ref.: #9661]

Country

USA

[Ref.: #9661]

Continent

North America

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #9661]	Biosafety level	1	Risk group (German classification)
[Ref.: #19478]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Streptomyces bikiniensis strain ATCC 11062 RNA polymerase (rpoB) gene, partial cds	AY280740	306	1896	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Streptomyces bikiniensis 16S ribosomal RNA gene, partial sequence	U72174	269	1896	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Streptomyces bikiniensis tryptophan synthase beta subunit (trpB) gene, partial cds	U72186	496	1896	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Streptomyces bikiniensis 16S rRNA gene, strain DSM40581	X79851	1517	1896	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	EST1013222 FvI Fusarium verticillioides cDNA clone FVIAM19, mRNA sequence	DR623094	704	117187	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	EST1013266 FvI Fusarium verticillioides cDNA clone FVIAM68, mRNA sequence	DR623138	694	117187	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces bikiniensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4011	D43987	120	1896	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces bikiniensis gene for 16S rRNA, partial sequence, strain: NBRC 14598	AB184602	1476	1896	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces bikiniensis gene for non-ribosomal peptide synthetase, partial cds, strain: NBRC 14598, clone: N3	AB432620	742	1896	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces bikiniensis gene for non-ribosomal peptide synthetase, partial cds, strain: NBRC 14598, clone: N2	AB432621	708	1896	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Streptomyces bikiniensis gene for non-ribosomal peptide synthetase, partial cds, strain: NBRC 14598, clone: N2b	AB432622	703	1896	*

Availability in culture collectionsStrain availability

[Ref.: #9661]

Culture collection no.

DSM 40581, ATCC 11062, ETH 14303, IMRU 3514, ISP 5581, JCM 4011, NRRL B-1049

[Ref.: #9661]

Strain history

<- E.B. Shirling, ISP <- ATCC <- IMRU

[Ref.: #20218]

Associated Passport(s) in StrainInfo

50682, 50680, 95617, 50688, 50689, 50690, 50693

References

#9661

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40581

#19478

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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