Virgibacillus proomii BO413, F 2737/77 | Type strain | DSM 13055, LMG 12370

Strain identifier

BacDive ID: 1480

Type strain:

Species: Virgibacillus proomii

Strain Designation: BO413, F 2737/77

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4888]	Domain	Bacteria
[Ref.: #4888]	Phylum	Firmicutes
[Ref.: #4888]	Class	Bacilli
[Ref.: #4888]	Order	Bacillales
[Ref.: #4888]	Family	Bacillaceae
[Ref.: #4888]	Genus	Virgibacillus
[Ref.: #4888]	Species	Virgibacillus proomii
[Ref.: #4888]	Full Scientific Name	Virgibacillus proomii Heyndrickx et al. 1999
[Ref.: #4888]	Strain Designation	BO413, F 2737/77
[Ref.: #4888]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Firmicutes
[Ref.: #20215]	Class	Bacilli		Int. J. Syst. Evol. Microbiol. 60:469
[Ref.: #20215]	Family	Bacillaceae		Int. J. Syst. Bacteriol. 30:235
[Ref.: #20215]	Genus	Virgibacillus	gen. nov. (VP)	Int. J. Syst. Bacteriol. 48:104*
[Ref.: #20215]	Species	Virgibacillus proomii	sp. nov. (VP)	Int. J. Syst. Bacteriol. 49:1087*
[Ref.: #20215]	Full Scientific Name	Virgibacillus proomii Heyndrickx et al. 1999

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23061]	Gram stain	positive
[Ref.: #23061]	Cell length	2.0-8.0 mm
[Ref.: #23061]	Cell width	0.5-0.7 mm
[Ref.: #23061]	Cell shape	rod-shaped
[Ref.: #23061]	Motility	yes

[Ref.: #23061]	Colony size	1.0-4.0 mm
[Ref.: #23061]	Colony color	creamy-grey
[Ref.: #23061]	Colony shape	circular
[Ref.: #23061]	Incubation period	2 days
[Ref.: #23061]	Cultivation medium used	trypticase soy agar

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23061]		catalase	+	1.11.1.6

	Metabolite	Production
[Ref.: #23061]	Acetoin	no
[Ref.: #23061]	Hydrogen sulfide	no
[Ref.: #23061]	Indole	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #23061]		Acetoin	-

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23061]	2-Dehydro-D-gluconate	-	builds acid from
[Ref.: #23061]	5-Dehydro-D-gluconate	-	builds acid from
[Ref.: #23061]	Adonitol	-	builds acid from
[Ref.: #23061]	Amygdalin	-	builds acid from
[Ref.: #23061]	Arbutin	-	builds gas from
[Ref.: #23061]	Arbutin	+	builds acid from
[Ref.: #23061]	Casein	+	hydrolysis
[Ref.: #23061]	Cellobiose	-	builds acid from
[Ref.: #23061]	D-Arabinose	-	builds acid from
[Ref.: #23061]	D-Arabitol	-	builds acid from
[Ref.: #23061]	D-Fructose	-	builds gas from
[Ref.: #23061]	D-Fructose	+	builds acid from
[Ref.: #23061]	D-Fucose	-	builds acid from
[Ref.: #23061]	D-Glucose	-	builds gas from
[Ref.: #23061]	D-Glucose	+	builds acid from
[Ref.: #23061]	D-Lyxose	-	builds acid from
[Ref.: #23061]	D-Mannose	-	builds gas from
[Ref.: #23061]	D-Mannose	+	builds acid from
[Ref.: #23061]	D-Melezitose	-	builds acid from
[Ref.: #23061]	D-Melibiose	-	builds acid from
[Ref.: #23061]	D-Raffinose	-	builds acid from
[Ref.: #23061]	D-Tagatose	-	builds gas from
[Ref.: #23061]	D-Tagatose	+	builds acid from
[Ref.: #23061]	D-Turanose	-	builds acid from
[Ref.: #23061]	D-Xylose	-	builds acid from
[Ref.: #23061]	Erythritol	-	builds acid from
[Ref.: #23061]	Esculin	+	hydrolysis
[Ref.: #23061]	Galactitol	-	builds acid from
[Ref.: #23061]	Galactose	-	builds gas from
[Ref.: #23061]	Galactose	+	builds acid from
[Ref.: #23061]	Gelatin	+	hydrolysis
[Ref.: #23061]	Gentiobiose	-	builds acid from
[Ref.: #23061]	Gluconate	-	builds acid from
[Ref.: #23061]	Glycerol	-	builds acid from
[Ref.: #23061]	Glycogen	-	builds acid from
[Ref.: #23061]	Inositol	-	builds gas from
[Ref.: #23061]	Inositol	+	builds acid from
[Ref.: #23061]	Inulin	-	builds acid from
[Ref.: #23061]	L-Arabinose	-	builds acid from
[Ref.: #23061]	L-Arabitol	-	builds acid from
[Ref.: #23061]	L-Fucose	-	builds acid from
[Ref.: #23061]	L-Sorbose	-	builds acid from
[Ref.: #23061]	L-Xylose	-	builds acid from
[Ref.: #23061]	Lactose	-	builds acid from
[Ref.: #23061]	Maltose	-	builds gas from
[Ref.: #23061]	Maltose	+	builds acid from
[Ref.: #23061]	Mannitol	-	builds acid from
[Ref.: #23061]	Methyl alpha-D-glucopyranoside	-	builds gas from
[Ref.: #23061]	Methyl alpha-D-glucopyranoside	+	builds acid from
[Ref.: #23061]	Methyl alpha-D-mannoside	-	builds acid from
[Ref.: #23061]	N-Acetylglucosamine	-	builds gas from
[Ref.: #23061]	N-Acetylglucosamine	+	builds acid from
[Ref.: #23061]	Nitrate	-	reduction
[Ref.: #23061]	Rhamnose	-	builds acid from
[Ref.: #23061]	Ribose	-	builds gas from
[Ref.: #23061]	Ribose	+	builds acid from
[Ref.: #23061]	Salicin	-	builds gas from
[Ref.: #23061]	Salicin	+	builds acid from
[Ref.: #23061]	Sorbitol	-	builds acid from
[Ref.: #23061]	Starch	-	builds gas from
[Ref.: #23061]	Starch	+	builds acid from
[Ref.: #23061]	Sucrose	-	builds gas from
[Ref.: #23061]	Sucrose	+	builds acid from
[Ref.: #23061]	Trehalose	-	builds gas from
[Ref.: #23061]	Trehalose	+	builds acid from
[Ref.: #23061]	Xylitol	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #23061]

Oxygen tolerance

facultative anaerobe

[Ref.: #23061]	Spore description	spherical to ellipsoidal,terminal or sometimes subterminal, in swollen sporangia
[Ref.: #23061]	Type of spore	endospore
[Ref.: #23061]	Ability of spore formation	yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4888]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 30°C, + 3% NaCl

[Ref.: #4888]

Culture medium growth

[Ref.: #4888]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #23061]

Culture medium

trypticase soy agar

[Ref.: #23061]

Culture medium growth

[Ref.: #39486]

Culture medium

MEDIUM 316 - for Bacillus subtilis subsp. spizizenii

[Ref.: #39486]

Culture medium growth

[Ref.: #39486]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4888]	growth	30 ̊C
[Ref.: #23061]	growth	15.0-50.0 ̊C
[Ref.: #23061]	optimum	37.0 ̊C
[Ref.: #39486]	growth	30 ̊C

[Ref.: #4888]	Temperature range	mesophilic
[Ref.: #23061]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4888]

Sample type/isolated from

water supply

[Ref.: #4888]

Geographic location (country and/or sea, region)

Colindale

[Ref.: #4888]

Country

United Kingdom

[Ref.: #4888]

Continent

Europe

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4888]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #23061]

GC-content

37.0 mol%

high performance liquid chromatography (HPLC)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Virgibacillus proomii gyrB gene for DNA gyrase subunit B, partial cds, strain: DSM 13055	AB307775	984	84407	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Virgibacillus proomii gyrB gene for DNA gyrase subunit B, partial cds, strain: DSM 13055	AB307776	1212	84407	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Virgibacillus proomii genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 675	AB367188	675	84407	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Virgibacillus proomii genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 495	AB367189	495	84407	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Virgibacillus proomii isolate VP2 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723673	592	84407	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Virgibacillus proomii isolate VP3 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723674	439	84407	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Virgibacillus proomii isolate Vp26 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723675	884	84407	*
[Ref.: #23061]	GenBank/EMBL/DDBJ		AJ012667

Availability in culture collectionsStrain availability

[Ref.: #4888]

Culture collection no.

DSM 13055, LMG 12370

[Ref.: #4888]

Strain history

<- LMG

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163460, 29526

References

#4888

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13055

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23061

M. Heyndrickx,L. Lebbe,K. Kersters,B. Hoste,R. De Wachter,P. De Vos,G. Forsyth,N. A. Logan: Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. IJSEM 49: 1083 - 1090 1999 ( DOI 10.1099/00207713-49-3-1083 )

#39486 ; Curators of the CIP;
* These References are textmined

Search for species Virgibacillus proomii in external resources:
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