Pseudonocardia petroleophila 78 | Type strain | DSM 43193, ATCC 15777, DSM 655, IFO 14406, IMET 7162, JCM 3378, JCM 3394, NBRC 14406, NCIB 9438

Strain identifier

BacDive ID: 13356

Type strain:

Species: Pseudonocardia petroleophila

Strain Designation: 78

Culture col. no.: DSM 43193, ATCC 15777, DSM 655, IFO 14406, IMET 7162, JCM 3378, JCM 3394, NBRC 14406, NCIB 9438

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #10857]	Domain	Bacteria
[Ref.: #10857]	Phylum	Actinobacteria
[Ref.: #10857]	Class	Actinobacteria
[Ref.: #10857]	Order	Actinomycetales
[Ref.: #10857]	Family	Pseudonocardiaceae
[Ref.: #10857]	Genus	Pseudonocardia
[Ref.: #10857]	Species	Pseudonocardia petroleophila
[Ref.: #10857]	Full Scientific Name	Pseudonocardia petroleophila (Hirsch and Engel 1956) Warwick et al. 1994
[Ref.: #10857]	Strain Designation	78
[Ref.: #10857]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Pseudonocardiaceae		Int. J. Syst. Bacteriol. 39:205
[Ref.: #20215]	Genus	Pseudonocardia	genus (AL)	Int. J. Syst. Bacteriol. 30:355 (AL)
[Ref.: #20215]	Species	Pseudonocardia petroleophila	comb. nov. (VP)	Int. J. Syst. Bacteriol. 44:298*
[Ref.: #20215]	Full Scientific Name	Pseudonocardia petroleophila (Hirsch and Engel 1956) Warwick et al. 1994

[Ref.: #20215]

Synonym

Nocardia petroleophila

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #10857]

Name of produced compound

hydrocarbons

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18481]		NaCl		maximum	2.5	%

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18481]	65	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18481]	181	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	-	+	+	-	+	+	-	-	-

	Metabolite	Utilization activity
[Ref.: #18481]	Arabinose	+
[Ref.: #18481]	Cellulose	+
[Ref.: #18481]	Fructose	-
[Ref.: #18481]	Glucose	+
[Ref.: #18481]	Inositol	+
[Ref.: #18481]	Mannitol	-
[Ref.: #18481]	Raffinose	+
[Ref.: #18481]	Rhamnose	+
[Ref.: #18481]	Sucrose	+
[Ref.: #18481]	Xylose	+

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #10857]

Culture medium

GLYCEROL-SOIL MEDIUM (DSMZ Medium 80), 28°C

[Ref.: #10857]

Culture medium growth

[Ref.: #10857]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #10857]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81), 28°C

[Ref.: #10857]

Culture medium growth

[Ref.: #10857]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #10857]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #10857]

Culture medium growth

[Ref.: #10857]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #39024]

Culture medium

MEDIUM 129 - for Pseudonocardia, Nocardia, Skermania and Streptomyces seoulensis, Streptomyces stramineus

[Ref.: #39024]

Culture medium growth

[Ref.: #39024]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10857]			growth	28 ̊C
[Ref.: #39024]			growth	25 ̊C

[Ref.: #10857]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #10857]

Sample type/isolated from

soil

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #18481]	Biosafety level	1	German classification
[Ref.: #10857]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudonocardia petroleophila 16S rRNA gene, strain ATCC 15777T	X80596	1402	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila strain DSM 43193 elongation factor G (fusA) gene, partial cds	EU722541	784	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila strain DSM 43193 DNA gyrase B subunit (gyrB) gene, partial cds	EU722575	1009	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila strain DSM 43193 GTP-binding protein LepA (lepA) gene, partial cds	EU722598	996	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila strain DSM 43193 RNA polymerase subunit B (rpoB) gene, partial cds	EU722630	811	37331	*
[Ref.: #20218]	INSDC Sequence	EST806219 Coccidioides posadasii spherule cDNA library, 0.5 to 5.3 kb Coccidioides posadasii cDNA clone CIFAM78 3- end, mRNA sequence	CO027835	920	199306	*
[Ref.: #20218]	INSDC Sequence	EST806220 Coccidioides posadasii spherule cDNA library, 0.5 to 5.3 kb Coccidioides posadasii cDNA clone CIFAM78 5- end, mRNA sequence	CO027836	842	199306	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Amycolata petrophilea 16S ribosomal RNA, part	X55608	1419	37331	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudonocardia petroleophila 16S rRNA gene, strain IMSNU 22072T	AJ252828	1515	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila strain JCM 3378 FADH2-dependent halogenase (halo) gene, partial cds	FJ502209	562	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila 16S ribosomal RNA gene, partial sequence	GU083570	1417	37331	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudonocardia petroleophila elongation factor Tu-like gene, partial sequence	GU083579	987	37331	*

Availability in culture collectionsStrain availability

[Ref.: #10857]

Culture collection no.

DSM 43193, ATCC 15777, DSM 655, IFO 14406, IMET 7162, JCM 3378, JCM 3394, NBRC 14406, NCIB 9438

[Ref.: #10857]

Strain history

<- I. J. Bousfield, NCIB <- P. Hirsch, 78

[Ref.: #20218]

Associated Passport(s) in StrainInfo

98663, 98659, 98660, 98664, 98665, 98661, 98662, 333802, 98666

References

#10857

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43193

#18481

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39024 ; Curators of the CIP;
* These References are textmined

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