Pseudomonas fragi | Type strain | DSM 3456, ATCC 4973, NRRL B-25, WDCM 00116

Strain identifier

BacDive ID: 12861

Type strain:

Species: Pseudomonas fragi

Culture col. no.: DSM 3456, ATCC 4973, NRRL B-25, WDCM 00116

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #1314]	Domain	Bacteria
[Ref.: #1314]	Phylum	Proteobacteria
[Ref.: #1314]	Class	Gammaproteobacteria
[Ref.: #1314]	Order	Pseudomonadales
[Ref.: #1314]	Family	Pseudomonadaceae
[Ref.: #1314]	Genus	Pseudomonas
[Ref.: #1314]	Species	Pseudomonas fragi
[Ref.: #1314]	Full Scientific Name	Pseudomonas fragi (Eichholz 1902) Gruber 1905
[Ref.: #1314]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2236
[Ref.: #20215]	Family	Pseudomonadaceae		Int. J. Syst. Bacteriol. 30:237
[Ref.: #20215]	Genus	Pseudomonas	genus (AL)	Int. J. Syst. Bacteriol. 30:349 (AL)
[Ref.: #20215]	Species	Pseudomonas fragi	species (AL)	Int. J. Syst. Bacteriol. 30:351 (AL)
[Ref.: #20215]	Full Scientific Name	Pseudomonas fragi (Eichholz 1902) Gruber 1905

Information on morphological and physiological propertiesMorphology and physiology

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #1314]	3409	-	-	-	+	-	-	-	-	+	+	-	-	-	-	+	+	-	+	+	-	+
[Ref.: #1314]	5184	-	-	-	+	-	-	-	-	+	+	-	-	-	-	+	+	-	+	+	-	+

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1314]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 26°C

[Ref.: #1314]

Culture medium growth

[Ref.: #1314]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #1314]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220), 26°C

[Ref.: #1314]

Culture medium growth

[Ref.: #1314]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #36579]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36579]

Culture medium growth

[Ref.: #36579]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1314]			growth	26 ̊C
[Ref.: #36579]			growth	30 ̊C

[Ref.: #1314]

Temperature range

mesophilic

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1314]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain ATCC 4973 16S ribosomal RNA gene, partial sequence	AF094733	1458	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain ATCC 4973 DNA gyrase subunit B (gyrB) gene, partial cds	DQ887266	1150	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain ATCC 4973 16S ribosomal RNA gene, partial sequence	FJ971871	791	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi partial gyrB gene for DNA gyrase subunit B, type strain ATCC 4973T	FN554184	798	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi partial rpoD gene for DNA-directed RNA polymerase subunit D, type strain ATCC 4973T	FN554466	711	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi 16S-23S intergenic spacer strain CECT 446	AJ279241	324	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446 glutaminyl-tRNA synthetase (glnS) gene, partial cds	KC806157	501	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T DNA gyrase subunit B (gyrB) gene, partial cds	KC923458	492	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T isoleucyl-tRNA synthetase (ileS) gene, partial cds	KC923535	552	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T NADH dehydrogenase subunit D (nuoD) gene, partial cds	KC923615	516	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T recombinase A (recA) gene, partial cds	KC923697	435	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T DNA-directed RNA polymerase subunit beta (rpoB) gene, partial cds	KC923777	477	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CECT446T RNA polymerase sigma factor (rpoD) gene, partial cds	KC923850	480	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain CFBP 4556 thiopurine methyltransferase (tpmK) gene, partial cds	AY616833	207	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain DSM 3456 CarA (carA) gene, partial cds	DQ647053	632	296	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Pseudomonas fragi gene for 16S rRNA, strain: IFO 3458	AB021413	1527	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi lips gene for lipase	AJ250176	889	296	*
[Ref.: #20218]	INSDC Sequence	Pseudomonas fragi lipase precursor, gene, complete cds	M14604	504	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi partial rpoB gene for DNA-directed RNA polymerase beta chain, strain LMG 2191T	AJ717444	1145	296	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Pseudomonas fragi partial aprX gene for alkaline metalloprotease, isolate type strain LMG 2191T	FM872388	864	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain LMG 2191 major outer membrane lipoprotein I (oprI) gene, partial cds	JF901416	249	296	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Pseudomonas fragi strain LMG 2191 peptidoglycan-associated lipoprotein OprL (oprL) gene, partial cds	JF901507	473	296	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Pseudomonas fragi gene for 16S rRNA, partial sequence, strain: NBRC 3458	AB680088	1462	296	*
[Ref.: #1314]	INSDC (WGS)	Pseudomonas fragi B25, whole genome shotgun sequencing project	AHZX00000000	227	1136138

Availability in culture collectionsStrain availability

[Ref.: #1314]

Culture collection no.

DSM 3456, ATCC 4973, NRRL B-25, WDCM 00116

[Ref.: #1314]

Strain history

<- ATCC <- B.W. Hammer

[Ref.: #20218]

Associated Passport(s) in StrainInfo

53192, 53183, 53198, 866243

References

#1314

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3456

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36579 ; Curators of the CIP;
* These References are textmined

Search for species Pseudomonas fragi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF