Name: Metamycoplasma neophronis G.A.
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8629

Type strain:

Species: Metamycoplasma neophronis

Strain Designation: G.A.

Culture col. no.: DSM 24097, ATCC BAA-2157

Strain history: <- A. Suárez-Pérez, Universidad de Las Palmas de Gran Canaria, Unidad de Epidemiologia y Medicina Preventiva, Spain; G.A. <- A.S. Ramírez

NCBI tax ID(s): 872983 (species)

SI-ID 408285

DSM 24097

Section

Metamycoplasma neophronis G.A. is a mesophilic, Gram-negative animal pathogen that was isolated from upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis.

Gram-negative
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmoidales*
	Family	*Metamycoplasmataceae*
	Genus	*Metamycoplasma*
	Species	**Metamycoplasma neophronis**
	Full Scientific Name (LPSN)	Metamycoplasma neophronis (Suárez-Pérez et al. 2012) Gupta et al. 2018

Synonym

Mycoplasma neophronis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

[Ref.: #17490]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17490]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #17490]

Culture medium growth

[Ref.: #17490]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17490]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17490]			growth	37 °C

[Ref.: #17490]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30342]		arginine ChEBI	+	carbon source

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	photosynthesis	50	7 of 14
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	starch degradation	50	5 of 10
[Ref.: #66794]	glycolysis	47.06	8 of 17
[Ref.: #66794]	NAD metabolism	44.44	8 of 18
[Ref.: #66794]	lipid metabolism	38.71	12 of 31
[Ref.: #66794]	phenylalanine metabolism	38.46	5 of 13
[Ref.: #66794]	purine metabolism	38.3	36 of 94
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	acetoin degradation	33.33	1 of 3
[Ref.: #66794]	serine metabolism	33.33	3 of 9
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	pyrimidine metabolism	31.11	14 of 45
[Ref.: #66794]	leucine metabolism	30.77	4 of 13
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	oxidative phosphorylation	27.47	25 of 91
[Ref.: #66794]	proline metabolism	27.27	3 of 11
[Ref.: #66794]	pentose phosphate pathway	27.27	3 of 11
[Ref.: #66794]	methionine metabolism	26.92	7 of 26
[Ref.: #66794]	non-pathway related	26.32	10 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	25	2 of 8
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	25	7 of 28
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	ppGpp biosynthesis	25	1 of 4
[Ref.: #66794]	alanine metabolism	24.14	7 of 29
[Ref.: #66794]	vitamin B1 metabolism	23.08	3 of 13
[Ref.: #66794]	urea cycle	23.08	3 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	cysteine metabolism	22.22	4 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	22.22	2 of 9
[Ref.: #66794]	d-mannose degradation	22.22	2 of 9
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	tyrosine metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17490]	Sample type/isolated from	upper respiratory tract of Egyptian vulture Neophron Percnopterus majorensis
[Ref.: #17490]	Host species	Neophron Percnopterus majorensis
[Ref.: #17490]	Geographic location (country and/or sea, region)	Canary Islands, Gran Canaria
[Ref.: #17490]	Country	Spain
[Ref.: #17490]	Country ISO 3 Code	ESP
[Ref.: #17490]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17490]	Pathogenicity (animal)	yes, in single cases
[Ref.: #17490]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17490]	Mycoplasma neophronis partial 16S rRNA gene, type strain G.A.T	FR682077	1517	ENA	872983 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Metamycoplasma neophronis DSM 24097	GCA_006491995	contig	GenBank	872983 tax ID	*
[Ref.: #66792]	Mycoplasma neophronis strain DSM 24097	872983.3	wgs	PATRIC	872983 tax ID	*

[Ref.: #17490]	GC-content	31 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30342]	GC-content	31 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycoplasma neophronis strain DSM 24097 PATRIC: 872983.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycoplasma neophronis strain DSM 24097 PATRIC: 872983.3
[Ref.: #69480]	motile	no	94.5	no
[Ref.: #69480]	flagellated	no	97.384	no
[Ref.: #69480]	gram-positive	no	50	no
[Ref.: #69480]	anaerobic	no	93.679	no
[Ref.: #69480]	halophile	no	52.641	no
[Ref.: #69480]	spore-forming	no	98.058	no
[Ref.: #69480]	thermophile	no	97.497	yes
[Ref.: #69480]	glucose-util	yes	84.136	no
[Ref.: #69480]	aerobic	no	94.853	no
[Ref.: #69480]	glucose-ferment	yes	72.402	no

Availability in culture collections External links

[Ref.: #17490]

Culture collection no.

DSM 24097, ATCC BAA-2157

[Ref.: #78010]

SI-ID 408285

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycoplasma neophronis sp. nov., isolated from the upper respiratory tract of Canarian Egyptian vultures (Neophron percnopterus majorensis).	Suarez-Perez A, Ramirez AS, Rosales RS, Calabuig P, Poveda C, Rossello-Mora R, Nicholas RAJ, Poveda JB	Int J Syst Evol Microbiol	10.1099/ijs.0.033803-0	2011	*

References

#17490

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24097

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30342

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26683 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#78010

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408285.1 )

#26683

IJSEM 1321 2012 ( DOI 10.1099/ijs.0.033803-0 , PubMed 21828019 )

* These data were automatically processed and therefore are not curated

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Mycoplasma neophronis strain DSM 24097

Mycoplasma neophronis strain DSM 24097

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