Name: Persephonella marina Ex-H1T
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 515

Type strain:

Species: Persephonella marina

Strain Designation: Ex-H1T

Culture col. no.: DSM 14350, OCM 794

Strain history: <- D. Götz; Ex-H1T <- A.-L. Reysenbach

NCBI tax ID(s): 309805 (species)

SI-ID 100860

DSM 14350

Section

Persephonella marina Ex-H1T is a chemolithoautotroph, thermophilic, Gram-negative bacterium that was isolated from deep-sea hydrothermal vent.

Gram-negative
motile
rod-shaped
chemolithoautotroph
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Hydrogenothermaceae*
	Genus	*Persephonella*
	Species	**Persephonella marina**
	Full Scientific Name (LPSN)	Persephonella marina Götz et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #23129]	Gram stain	negative

[Ref.: #23129]	Cell length	2-4 µm

[Ref.: #23129]	Cell width	0.3-0.4 µm

[Ref.: #23129]	Cell shape	rod-shaped

[Ref.: #23129]	Motility	yes

[Ref.: #23129]

Colony color

apricot-pink

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5316]

Culture medium

PERSEPHONELLA MEDIUM (DSMZ Medium 996)

[Ref.: #5316]

Culture medium growth

[Ref.: #5316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5316]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5316]	growth	70 °C
[Ref.: #23129]	maximum	80 °C
[Ref.: #23129]	minimum	55 °C
[Ref.: #23129]	optimum	73 °C

[Ref.: #5316]	Temperature range	thermophilic
[Ref.: #23129]	Temperature range	hyperthermophilic
[Ref.: #23129]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #23129]			optimum	6.0
[Ref.: #23129]			growth	4.7-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23129]

Nutrition type

chemolithoautotroph

[Ref.: #23129]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23129]		NaCl		growth	1.0-4.5	%(w/v)
[Ref.: #23129]		NaCl		optimum	2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23129]	elemental sulfur ChEBI	+	electron donor
[Ref.: #23129]	formate ChEBI	+	electron donor
[Ref.: #23129]	nitrate ChEBI	+	electron acceptor
[Ref.: #23129]	thiosulfate ChEBI	+	electron donor

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5316]	Sample type/isolated from	deep-sea hydrothermal vent
[Ref.: #5316]	Geographic location (country and/or sea, region)	East Pacific Rise, 9°N 104°W
[Ref.: #5316]	Country	Pacific Ocean
[Ref.: #5316]	Geographic location	9.0000°/-104.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF188332 (>99% sequence identity) for Persephonella marina subclade from Microbeatlas

Aquatic Samples	17
Soil Samples	5
Animal Samples	38
Plant Samples
Total Samples	60

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5316]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5316]	Persephonella marina 16S ribosomal RNA gene, partial sequence	AF188332	1463	ENA	123214 tax ID
[Ref.: #20218]	Persephonella marina 16S-23S rRNA intergenic spacer containing tRNA-Ile and tRNA-Ala genes, type strain DSM 14350T	AM259506	368	ENA	123214 tax ID	*

[Ref.: #5316]

GC-content

52 mol%

Availability in culture collections External links

[Ref.: #5316]

Culture collection no.

DSM 14350, OCM 794

[Ref.: #70194]

SI-ID 100860

References

#5316

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14350

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23129

D Götz, A Banta, T J Beveridge, A I Rushdi, B R T Simoneit, A L Reysenbach: Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents.. IJSEM 52: 1349 - 1359 2002 ( DOI 10.1099/00207713-52-4-1349 , PubMed 12148650 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70194

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100860.1 )

* These data were automatically processed and therefore are not curated

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