Name: Xenophilus azovorans KF46F
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3019

Type strain:

Species: Xenophilus azovorans

Strain Designation: KF46F

Culture col. no.: DSM 13620, CCUG 47268, NCIMB 13707, ATCC BAA-794

Strain history: <- S. Blümel, Univ. Stuttgart <- T. Leisinger, ETH Zuerich; KF46F

NCBI tax ID(s): 1123504 (strain), 151755 (species)

SI-ID 49497

DSM 13620, NCIMB 13707, CCUG 47268, ATCC BAA-794

Section

Xenophilus azovorans KF46F is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Xenophilus*
	Species	**Xenophilus azovorans**
	Full Scientific Name (LPSN)	Xenophilus azovorans Blümel et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4942]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4942]

Culture medium growth

[Ref.: #4942]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4942]

Culture medium composition

expand / minimize

[Ref.: #4942]

Culture medium

MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)

[Ref.: #4942]

Culture medium growth

[Ref.: #4942]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4942]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4942]			growth	30 °C
[Ref.: #57612]			growth	37 °C

[Ref.: #4942]	Temperature range	mesophilic
[Ref.: #57612]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57612]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.969

[Ref.: #4942]

Name of produced compound

azoreductase

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #57612]

Fatty acid	Percentage	ECL
C16:0	36.6	16
C17:0 CYCLO	20.6	16.888
C18:1 ω7c /12t/9t	17.6	17.824
C16:1 ω7c	7	15.819
C10:0 3OH	3.7	11.423
C10:0	2.6	10
C18:1 2OH	2.4	19.088
C18:2 ω6,9c/C18:0 ANTE	2.1	17.724
C19:0 CYCLO ω8c	1.7	18.9
C8:0 3OH	1.3	9.385
C16:1 2OH	1.2	17.047
C16:0 2OH	1.1	17.233
C15:0	0.9	15
Unidentified	0.7
C17:0	0.6	17

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4942]	Sample type/isolated from	soil
[Ref.: #4942]	Country	Switzerland
[Ref.: #4942]	Country ISO 3 Code	CHE
[Ref.: #4942]	Continent	Europe

[Ref.: #57612]	Sample type/isolated from	Soil after enrichment
[Ref.: #57612]	Sampling date	1980
[Ref.: #57612]	Country	Switzerland
[Ref.: #57612]	Country ISO 3 Code	CHE
[Ref.: #57612]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF285414 (>99% sequence identity) for Xenophilus azovorans subclade from Microbeatlas

Aquatic Samples	35
Soil Samples	27
Animal Samples	12
Plant Samples	4
Total Samples	78

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4942]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Xenophilus azovorans 16S ribosomal RNA gene, partial sequence	AF285414	1484	ENA	151755 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xenophilus azovorans DSM 13620	GCA_000745855	scaffold	GenBank	1123504 tax ID	*
[Ref.: #66792]	Xenophilus azovorans DSM 13620	1123504.3	wgs	PATRIC	1123504 tax ID	*
[Ref.: #66792]	Xenophilus azovorans DSM 13620	2571042002	draft	JGI IMG/M	1123504 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xenophilus azovorans DSM 13620 DSM 13620 NCBI: GCA_000745855.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xenophilus azovorans DSM 13620 DSM 13620 NCBI: GCA_000745855.1
[Ref.: #69480]	motile	no	83.557	no
[Ref.: #69480]	flagellated	no	94.981	no
[Ref.: #69480]	gram-positive	no	98.149	no
[Ref.: #69480]	anaerobic	no	98.816	yes
[Ref.: #69480]	aerobic	yes	93.78	yes
[Ref.: #69480]	halophile	no	95.725	no
[Ref.: #69480]	spore-forming	no	94.896	no
[Ref.: #69480]	glucose-util	no	57.538	no
[Ref.: #69480]	thermophile	no	99.316	yes
[Ref.: #69480]	glucose-ferment	no	89.65	no

Availability in culture collections External links

[Ref.: #4942]

Culture collection no.

DSM 13620, CCUG 47268, NCIMB 13707, ATCC BAA-794

[Ref.: #72541]

SI-ID 49497

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Kocuria indica DP-K7, a methyl red degrading actinobacterium.	Kumaran S, Ngo ACR, Schultes FPJ, Tischler D	3 Biotech	10.1007/s13205-020-2136-3	2020	*
Phylogeny	Corticibacter populi gen. nov., sp. nov., a new member of the family Comamonadaceae, from the bark of Populus euramericana.	Fang W, Li Y, Xue H, Tian G, Wang L, Guo MW, Piao CG	Int J Syst Evol Microbiol	10.1099/ijsem.0.000418	2015	*
Enzymology	Characterisation of the flavin-free oxygen-tolerant azoreductase from Xenophilus azovorans KF46F in comparison to flavin-containing azoreductases.	Burger S, Stolz A	Appl Microbiol Biotechnol	10.1007/s00253-010-2669-1	2010	*
Phylogeny	Xenophilus aerolatus sp. nov., isolated from air.	Kim SJ, Kim YS, Weon HY, Anandham R, Noh HJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.013185-0	2009	*
Enzymology	Molecular cloning and characterization of the gene coding for the aerobic azoreductase from Xenophilus azovorans KF46F.	Blumel S, Knackmuss HJ, Stolz A	Appl Environ Microbiol	10.1128/AEM.68.8.3948-3955.2002	2002	*
Phylogeny	Xenophilus azovorans gen. nov., sp. nov., a soil bacterium that is able to degrade azo dyes of the Orange II type.	Blumel S, Busse HJ, Stolz A, Kampfer P	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1831	2001	*

References

#4942

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13620

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#57612 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47268

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72541

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49497.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Xenophilus azovorans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Xenophilus azovorans DSM 13620 DSM 13620

Xenophilus azovorans DSM 13620 DSM 13620

Change proposal

Change proposal