Name: Archaeoglobus neptunius SE56
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 167621

Type strain:

Species: Archaeoglobus neptunius

Strain Designation: SE56

Culture col. no.: DSM 110954, VKM B-3474

Strain history: <- G. Slobodkina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SE56 <- G. Slobodkina {2018}

NCBI tax ID(s): 2798580 (species)

SI-ID 407782

DSM 110954

Section

Archaeoglobus neptunius SE56 is a hyperthermophilic archaeon that was isolated from deep-sea hdyrothermal vent.

hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Archaeoglobi*
	Order	*Archaeoglobales*
	Family	*Archaeoglobaceae*
	Genus	*Archaeoglobus*
	Species	**Archaeoglobus neptunius**
	Full Scientific Name (LPSN)	Archaeoglobus neptunius Slobodkina et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68882]

Culture medium

ARCHAEOGLOBUS NEPTUNIUS MEDIUM (DSMZ Medium 399a)

[Ref.: #68882]

Culture medium growth

[Ref.: #68882]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68882]			growth	80 °C

[Ref.: #68882]

Temperature range

hyperthermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68882]	Sample type/isolated from	deep-sea hdyrothermal vent
[Ref.: #68882]	Geographic location (country and/or sea, region)	TAG vent field, Mid-Atlantic Ridge
[Ref.: #68882]	Country	International waters
[Ref.: #68882]	Geographic location	26.2358°/-45.3836°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20215]	Archaeoglobus neptunius strain SE56 16S ribosomal RNA gene, partial sequence	MW531883	1496	ENA	2798580 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Archaeoglobus neptunius SE56	GCA_016757965	contig	GenBank	2798580 tax ID	*

[Ref.: #68882]

GC-content

46 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Archaeoglobus neptunius SE56 NCBI: GCA_016757965.1
[Ref.: #69480]	flagellated	no	96.687	no
[Ref.: #69480]	gram-positive	no	97.931	no
[Ref.: #69480]	anaerobic	yes	98.625	no
[Ref.: #69480]	aerobic	no	95.704	no
[Ref.: #69480]	halophile	no	82.143	no
[Ref.: #69480]	spore-forming	no	94.987	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	71.543	no
[Ref.: #69480]	motile	no	83.653	no
[Ref.: #69480]	glucose-ferment	no	73.893	no

Availability in culture collections External links

[Ref.: #20215]

Culture collection no.

DSM 110954, VKM B-3474

[Ref.: #114991]

SI-ID 407782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Physiological and Genomic Characterization of a Hyperthermophilic Archaeon Archaeoglobus neptunius sp. nov. Isolated From a Deep-Sea Hydrothermal Vent Warrants the Reclassification of the Genus Archaeoglobus.	Slobodkina G, Allioux M, Merkel A, Cambon-Bonavita MA, Alain K, Jebbar M, Slobodkin A	Front Microbiol	10.3389/fmicb.2021.679245	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68882

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110954

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114991

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407782.1 )

* These data were automatically processed and therefore are not curated

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