Name: Achromobacter xylosoxidans JCM 9787
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166058

Type strain:

Species: Achromobacter xylosoxidans

Culture col. no.: JCM 9787

Strain history: T. Kudo A41.

NCBI tax ID(s): 1295130 (strain), 85698 (species)

Other strains from Achromobacter xylosoxidans

Section

Achromobacter xylosoxidans JCM 9787 is a mesophilic, Gram-negative bacterium that was isolated from Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter xylosoxidans**
	Full Scientific Name (LPSN)	Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981

	Synonym	"Achromobacter* xylosoxidans"*
	Synonym	Alcaligenes xylosoxidans
	Synonym	"Alcaligenes* xylosoxydans"*
	Synonym	Alcaligenes denitrificans subsp. xylosoxydans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.963

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from the Arakawa River,by enrichment with biphenyl as the sole source of carbon and energy
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alcaligenes xylosoxydans DNA for 16S rRNA, partial sequence	D87096	882	ENA	85698 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter xylosoxidans JCM 9787	GCA_001312125	contig	GenBank	1295130 tax ID	*
[Ref.: #66792]	Achromobacter denitrificans strain A41	32002.45	wgs	PATRIC	32002 tax ID	*
[Ref.: #66792]	Achromobacter xylosoxidans JCM 9787	1295130.3	wgs	PATRIC	1295130 tax ID	*
[Ref.: #66792]	Achromobacter xylosoxidans JCM 9787	2728369710	draft	JGI IMG/M	1295130 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Achromobacter xylosoxidans JCM 9787 PATRIC: 1295130.3
[Ref.: #69481]	spore-forming	no	79	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter xylosoxidans JCM 9787 PATRIC: 1295130.3
[Ref.: #69480]	motile	yes	90.594	no
[Ref.: #69480]	gram-positive	no	97.32	no
[Ref.: #69480]	anaerobic	no	97.848	no
[Ref.: #69480]	aerobic	yes	86.713	no
[Ref.: #69480]	halophile	no	83.213	no
[Ref.: #69480]	spore-forming	no	95.18	no
[Ref.: #69480]	glucose-util	no	60.546	no
[Ref.: #69480]	flagellated	no	58.264	no
[Ref.: #69480]	thermophile	no	99.203	yes
[Ref.: #69480]	glucose-ferment	no	88.588	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 9787

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Achromobacter xylosoxidans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF