Name: Herbaspirillum huttiense JCM 14681
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161519

Type strain:

Species: Herbaspirillum huttiense

Culture col. no.: JCM 14681

Strain history: K. Minamisawa B39 (Herbaspirillum sp.).

NCBI tax ID(s): 863372 (species)

Other strains from Herbaspirillum huttiense

H. huttiense 266, DSM 10281, ATCC 14670, JCM ... (type strain)
H. huttiense 7-2, DSM 21883, ATCC BAA-806, CCUG ... (type strain)
H. huttiense CIP 102439
H. huttiense CCUG 52673
H. huttiense CCUG 52906
H. huttiense CCUG 52907 A

Section

Herbaspirillum huttiense JCM 14681 is a mesophilic bacterium that was isolated from Stem of wild rice W1627.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herbaspirillum*
	Species	**Herbaspirillum huttiense**
	Full Scientific Name (LPSN)	Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004

Synonym

Pseudomonas huttiensis

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Stem of wild rice (Oryza meridionalis) W1627
[Ref.: #67770]	Host species	Oryza meridionalis
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC595299 (>99% sequence identity) for Herbaspirillum from Microbeatlas

Aquatic Samples	342
Soil Samples	197
Animal Samples	743
Plant Samples	411
Total Samples	1693

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbaspirillum sp. B39 gene for 16S ribosomal RNA	AB027694	600	ENA	95609 tax ID
[Ref.: #67770]	Herbaspirillum huttiense JCM:14681 gene for 16S rRNA, partial sequence	LC595299	1455	ENA	863372 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbaspirillum sp. B39	GCA_000333495	contig	GenBank	95609 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbaspirillum sp. B39 B39 NCBI: GCA_000333495.1
[Ref.: #69480]	motile	yes	85.197	no
[Ref.: #69480]	flagellated	no	54.432	no
[Ref.: #69480]	gram-positive	no	99.058	no
[Ref.: #69480]	anaerobic	no	99.002	no
[Ref.: #69480]	aerobic	yes	87.4	no
[Ref.: #69480]	halophile	no	95.033	no
[Ref.: #69480]	spore-forming	no	93.983	no
[Ref.: #69480]	thermophile	no	99.334	yes
[Ref.: #69480]	glucose-util	yes	89.171	no
[Ref.: #69480]	glucose-ferment	no	90.158	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14681

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Herbaspirillum sp. B39 B39

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