Name: Amycolatopsis vancoresmycina ST101170
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13256

Type strain:

Species: Amycolatopsis vancoresmycina

Strain Designation: ST101170

Culture col. no.: DSM 44592, JCM 12675, NRRL B-24208

Strain history: DSM 44592 <-- J. Wink ST 101170.

NCBI tax ID(s): 1292037 (strain), 208444 (species)

SI-ID 97666

DSM 44592, NRRL B-24208, JCM 12675

Section

Amycolatopsis vancoresmycina ST101170 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis vancoresmycina**
	Full Scientific Name (LPSN)	Amycolatopsis vancoresmycina Wink et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19679]	Colony color	Saffron yellow
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 2

[Ref.: #19679]	Colony color	Maize yellow
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 3

[Ref.: #19679]	Colony color	Maize yellow
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 4

[Ref.: #19679]	Colony color	Maize yellow
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 5

[Ref.: #19679]	Colony color	Brown beige
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 6

[Ref.: #19679]	Colony color	Maize yellow
[Ref.: #19679]	Incubation period	10-14 days
[Ref.: #19679]	Cultivation medium used	ISP 7

[Ref.: #19679]	Multicellular complex forming ability	yes
[Ref.: #19679]	Multicellular complex name	Aerial Mycelium
[Ref.: #19679]	Multicellular complex color	White
[Ref.: #19679]	Medium Name (multicellularity)	ISP 2

[Ref.: #19679]	Multicellular complex forming ability	yes
[Ref.: #19679]	Multicellular complex name	Aerial Mycelium
[Ref.: #19679]	Multicellular complex color	White
[Ref.: #19679]	Medium Name (multicellularity)	ISP 3

[Ref.: #19679]	Multicellular complex forming ability	yes
[Ref.: #19679]	Multicellular complex name	Aerial Mycelium
[Ref.: #19679]	Multicellular complex color	White
[Ref.: #19679]	Medium Name (multicellularity)	ISP 4

[Ref.: #19679]	Multicellular complex forming ability	no
[Ref.: #19679]	Medium Name (multicellularity)	ISP 5

[Ref.: #19679]	Multicellular complex forming ability	no
[Ref.: #19679]	Medium Name (multicellularity)	ISP 6

[Ref.: #19679]	Multicellular complex forming ability	yes
[Ref.: #19679]	Multicellular complex name	Aerial Mycelium
[Ref.: #19679]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11907]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #11907]

Culture medium growth

[Ref.: #11907]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11907]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 2

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 3

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 4

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 5

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 6

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

[Ref.: #19679]

Culture medium

ISP 7

[Ref.: #19679]

Culture medium growth

[Ref.: #19679]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11907]	growth	28 °C
[Ref.: #19679]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11907]	Temperature range	mesophilic
[Ref.: #19679]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #11907]	Name of produced compound	vancoresmycin
[Ref.: #19679]	Name of produced compound	Vancoresmycin

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19679]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19679]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #19679]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #19679]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #19679]	mannitol ChEBI	+
[Ref.: #19679]	myo-inositol ChEBI	+
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19679]	raffinose ChEBI	+
[Ref.: #19679]	rhamnose ChEBI	+
[Ref.: #19679]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #19679]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	vancoresmycin	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19679]	497	+	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19679]	248	-	-	-	+	-	-	-	+	+	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19679]	504	not determinedn.d.	+	-	+	+	+	+	+	+	+	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11907]	Sample type/isolated from	indian soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ508240 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	20
Soil Samples	1065
Animal Samples	41
Plant Samples	104
Total Samples	1230

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11907]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19679]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11907]	Amycolatopsis vancoresmycetica 16S rRNA gene, type strain DSM 44592T	AJ508240	1478	ENA	208444 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Amycolatopsis vancoresmycina DSM 44592	GCA_000388135	contig	GenBank	1292037 tax ID
[Ref.: #67770]	Amycolatopsis vancoresmycina NRRL B-24208	GCA_000716785	contig	GenBank	208444 tax ID
[Ref.: #66792]	Amycolatopsis vancoresmycina DSM 44592	1292037.4	wgs	PATRIC	1292037 tax ID	*
[Ref.: #66792]	Amycolatopsis vancoresmycina DSM 44592	2545824680	draft	JGI IMG/M	1292037 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Amycolatopsis vancoresmycina DSM 44592 PATRIC: 1292037.4
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis vancoresmycina DSM 44592 PATRIC: 1292037.4
[Ref.: #69480]	motile	no	91.366	no
[Ref.: #69480]	gram-positive	yes	85.398	no
[Ref.: #69480]	anaerobic	no	99.425	no
[Ref.: #69480]	aerobic	yes	91.695	no
[Ref.: #69480]	halophile	no	91.741	no
[Ref.: #69480]	spore-forming	yes	89.553	no
[Ref.: #69480]	glucose-util	yes	89.223	yes
[Ref.: #69480]	flagellated	no	97.566	no
[Ref.: #69480]	thermophile	no	98.462	yes
[Ref.: #69480]	glucose-ferment	no	92.322	no

Availability in culture collections External links

[Ref.: #11907]

Culture collection no.

DSM 44592, JCM 12675, NRRL B-24208

[Ref.: #82460]

SI-ID 97666

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis silviterrae sp. nov., isolated from forest soil.	Jamjan W, Suriyachadkun C, Tanasupawat S, Sakai K, Tashiro Y, Okugawa Y, Tongpim S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002687	2018	*
Genetics	Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592(T).	Kaur N, Kumar S, Mayilraj S	Genom Data	10.1016/j.gdata.2013.10.006	2013	*
Phylogeny	Amycolatopsis rhabdoformis sp. nov., an actinomycete isolated from a tropical forest soil.	Souza WR, Silva RE, Goodfellow M, Busarakam K, Figueiro FS, Ferreira D, Rodrigues-Filho E, Moraes LAB, Zucchi TD	Int J Syst Evol Microbiol	10.1099/ijs.0.000176	2015	*
Phylogeny	Amycolatopsis bartoniae sp. nov. and Amycolatopsis bullii sp. nov., mesophilic actinomycetes isolated from arid Australian soils.	Zucchi TD, Bonda AN, Frank S, Kim BY, Kshetrimayum JD, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9716-0	2012	*
Phylogeny	Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov.	Wink JM, Kroppenstedt RM, Ganguli BN, Nadkarni SR, Schumann P, Seibert G, Stackebrandt E	Syst Appl Microbiol	10.1078/072320203322337290	2003	*

References

#11907

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44592

#19679

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82460

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97666.1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis vancoresmycina DSM 44592

Amycolatopsis vancoresmycina DSM 44592

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