Name: Cohnella panacarvi DSM 18696
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11449

Type strain:

Species: Cohnella panacarvi

Culture col. no.: DSM 18696, KCTC 13060, Gsoil 349

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 979226 (strain), 400776 (species)

SI-ID 400678

DSM 18696

Section

Cohnella panacarvi DSM 18696 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, ginseng field.

rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Cohnella*
	Species	**Cohnella panacarvi**
	Full Scientific Name (LPSN)	Cohnella panacarvi Yoon et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7662]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7662]

Culture medium growth

[Ref.: #7662]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7662]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7662]			growth	30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #7662]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7662]	Sample type/isolated from	soil, ginseng field
[Ref.: #7662]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #7662]	Country	Republic of Korea
[Ref.: #7662]	Country ISO 3 Code	KOR
[Ref.: #7662]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil, ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB271056 (>99% sequence identity) for Cohnella panacarvi subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	266
Animal Samples	152
Plant Samples	19
Total Samples	461

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7662]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7662]	Cohnella panacarvi gene for 16S rRNA, partial sequence	AB271056	1478	ENA	979226 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cohnella panacarvi Gsoil 349, DSM 18696	2516493019	draft	JGI IMG/M	979226 tax ID	*

[Ref.: #7662]	GC-content	53.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	53.4 mol%

Availability in culture collections External links

[Ref.: #7662]

Culture collection no.

DSM 18696, KCTC 13060, Gsoil 349

[Ref.: #80687]

SI-ID 400678

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cohnella kolymensis sp. nov., a novel bacillus isolated from Siberian permafrost.	Kudryashova EB, Karlyshev AV, Ariskina EV, Streshinskaya GM, Vinokurova NG, Kopitsyn DS, Evtushenko LI	Int J Syst Evol Microbiol	10.1099/ijsem.0.002919	2018	*
Phylogeny	Cohnella saccharovorans sp. nov., isolated from ginseng soil.	Choi JH, Seok JH, Jang HJ, Cha JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000933	2016	*
Phylogeny	Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from ginseng cultivating soil.	Yoon MH, Ten LN, Im WT	J Microbiol Biotechnol		2007	*

References

#7662

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18696

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400678.1 )

* These data were automatically processed and therefore are not curated

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